miRNA display CGI


Results 41 - 60 of 156 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23230 5' -55.7 NC_005259.1 + 22457 0.75 0.294355
Target:  5'- gGCuACCucguGCGCCCGCGcgGUcUGACCGuCCg -3'
miRNA:   3'- -CG-UGG----CGCGGGUGCuaCA-ACUGGU-GG- -5'
23230 5' -55.7 NC_005259.1 + 22653 0.66 0.775591
Target:  5'- aCGCCGCccaccacaucGCCgACGcac-UGACCGCCg -3'
miRNA:   3'- cGUGGCG----------CGGgUGCuacaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 24135 0.66 0.779484
Target:  5'- cCGCCGcCGCCCugcucgccgaguugcGCGAUGUcuacGCCaACCa -3'
miRNA:   3'- cGUGGC-GCGGG---------------UGCUACAac--UGG-UGG- -5'
23230 5' -55.7 NC_005259.1 + 24475 0.67 0.692854
Target:  5'- -gACCGgagagcuCGUCCucgGCGAUGUcaaGACCACCa -3'
miRNA:   3'- cgUGGC-------GCGGG---UGCUACAa--CUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 25962 0.71 0.492869
Target:  5'- cCGCCGaCGCCUGCGAUGa-GACCgggcagcGCCg -3'
miRNA:   3'- cGUGGC-GCGGGUGCUACaaCUGG-------UGG- -5'
23230 5' -55.7 NC_005259.1 + 26170 0.69 0.587245
Target:  5'- uGC-CCGCGUCCuguGCGAucuccagaaUGUgcggcagcaUGGCCGCCg -3'
miRNA:   3'- -CGuGGCGCGGG---UGCU---------ACA---------ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 26497 0.7 0.555546
Target:  5'- aCGCCGCgagcucgccGCCCggcgagaagagcGCGGUGagcagcUUGGCCACCa -3'
miRNA:   3'- cGUGGCG---------CGGG------------UGCUAC------AACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 26799 0.71 0.50395
Target:  5'- aGCGCCGcCGCCCg----GUUGGCCgguACCg -3'
miRNA:   3'- -CGUGGC-GCGGGugcuaCAACUGG---UGG- -5'
23230 5' -55.7 NC_005259.1 + 26969 0.69 0.619262
Target:  5'- aGCGCCGUGCCgaacucgGCGGUGUaGACguUCg -3'
miRNA:   3'- -CGUGGCGCGGg------UGCUACAaCUGguGG- -5'
23230 5' -55.7 NC_005259.1 + 27416 0.66 0.765762
Target:  5'- aGCuCgGUGCCCGCGAggaaUUGGCuCACg -3'
miRNA:   3'- -CGuGgCGCGGGUGCUac--AACUG-GUGg -5'
23230 5' -55.7 NC_005259.1 + 27530 0.7 0.524364
Target:  5'- aCGCCGUcgagGcCCCACGGcgggaUGUUGcgGCCACCg -3'
miRNA:   3'- cGUGGCG----C-GGGUGCU-----ACAAC--UGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 27744 0.71 0.493872
Target:  5'- cCGCUGCuGCCCACGGUGc--AUCGCCc -3'
miRNA:   3'- cGUGGCG-CGGGUGCUACaacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 27860 0.66 0.775591
Target:  5'- cGCGCCGUacgaccGCCCucuUGGg--UGugCACCa -3'
miRNA:   3'- -CGUGGCG------CGGGu--GCUacaACugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 28070 0.71 0.483887
Target:  5'- cCugC-CGCCaCACGGUGggGugCACCu -3'
miRNA:   3'- cGugGcGCGG-GUGCUACaaCugGUGG- -5'
23230 5' -55.7 NC_005259.1 + 28835 0.71 0.493872
Target:  5'- gGCACCGCGuUCUACaaaGUcGACCGCCc -3'
miRNA:   3'- -CGUGGCGC-GGGUGcuaCAaCUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 29996 0.72 0.416964
Target:  5'- cGCACgGUGgucaCCACGAcaaggUGACCACCg -3'
miRNA:   3'- -CGUGgCGCg---GGUGCUaca--ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 30524 0.67 0.693909
Target:  5'- aGCucuuuaGCGCCCugcAUGAUcaUGGCCACCg -3'
miRNA:   3'- -CGugg---CGCGGG---UGCUAcaACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 30665 0.72 0.435517
Target:  5'- aGCACauCGCCCgGCGA-GUagcUGGCCACCu -3'
miRNA:   3'- -CGUGgcGCGGG-UGCUaCA---ACUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 31406 0.67 0.725251
Target:  5'- aGCACaGCGCCC-CGAgGUc-GCCGCUg -3'
miRNA:   3'- -CGUGgCGCGGGuGCUaCAacUGGUGG- -5'
23230 5' -55.7 NC_005259.1 + 31569 0.68 0.672714
Target:  5'- uGCACCGCGCCU--GAUcGUc-GCCAUCa -3'
miRNA:   3'- -CGUGGCGCGGGugCUA-CAacUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.