miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 3' -56.1 NC_005259.1 + 45734 0.66 0.749169
Target:  5'- gCA-CCACCGAGGc---CGCG-CACCg -3'
miRNA:   3'- aGUcGGUGGCUCCacuaGCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 46321 0.78 0.183792
Target:  5'- gCGGCC-CCGAGG--GUCGCGUCGCg -3'
miRNA:   3'- aGUCGGuGGCUCCacUAGCGCAGUGg -5'
23232 3' -56.1 NC_005259.1 + 46589 0.67 0.718463
Target:  5'- --cGCCGcCCGAGGcGAgcagCGCGUCGu- -3'
miRNA:   3'- aguCGGU-GGCUCCaCUa---GCGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 47275 0.73 0.359273
Target:  5'- cCAGCgCACCGAGcaGAcCGCcGUCGCCg -3'
miRNA:   3'- aGUCG-GUGGCUCcaCUaGCG-CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 47337 0.68 0.612404
Target:  5'- gUCAGCC-CCgugaucguuuuGAGGauguugagGAUCGUGUUGCCg -3'
miRNA:   3'- -AGUCGGuGG-----------CUCCa-------CUAGCGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 47468 1.13 0.000662
Target:  5'- gUCAGCCACCGAGGUGAUCGCGUCACCg -3'
miRNA:   3'- -AGUCGGUGGCUCCACUAGCGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 47609 0.69 0.591092
Target:  5'- gUCGGCgagGCUGAGGUucUUGuCGUCGCCg -3'
miRNA:   3'- -AGUCGg--UGGCUCCAcuAGC-GCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 47794 0.71 0.458202
Target:  5'- gCAGCgGuCCGAcGGUGAgUCGCGagACCu -3'
miRNA:   3'- aGUCGgU-GGCU-CCACU-AGCGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 47900 0.71 0.448606
Target:  5'- gUCGGCuCGuuGAGcGccuUGAUgGCGUCGCCg -3'
miRNA:   3'- -AGUCG-GUggCUC-C---ACUAgCGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 50795 0.71 0.458202
Target:  5'- gUCGGaCCAUCGAGGUucuuguucGGUCaGCGcgCACCa -3'
miRNA:   3'- -AGUC-GGUGGCUCCA--------CUAG-CGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 51488 0.68 0.612404
Target:  5'- aCA-CCGCCGGGGauaGGUCGaCGcCGCCg -3'
miRNA:   3'- aGUcGGUGGCUCCa--CUAGC-GCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 52027 0.68 0.644471
Target:  5'- -aGGCCGCCGcacUGcgCGCuGUCGCCg -3'
miRNA:   3'- agUCGGUGGCuccACuaGCG-CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 52403 0.67 0.697572
Target:  5'- -gGGCCAUCGAGGUGugggCGC-UCgACUc -3'
miRNA:   3'- agUCGGUGGCUCCACua--GCGcAG-UGG- -5'
23232 3' -56.1 NC_005259.1 + 53152 0.73 0.335007
Target:  5'- aUCAGCCgcuacGCCGAGGccGAUCuCGcCACCg -3'
miRNA:   3'- -AGUCGG-----UGGCUCCa-CUAGcGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 53725 0.67 0.67644
Target:  5'- --cGCCGCUGAuGGUGA---UGUCGCCg -3'
miRNA:   3'- aguCGGUGGCU-CCACUagcGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 55036 0.7 0.538513
Target:  5'- -gGGCUGCCGAGGUGcUUGCcucgguggcaGUCugCg -3'
miRNA:   3'- agUCGGUGGCUCCACuAGCG----------CAGugG- -5'
23232 3' -56.1 NC_005259.1 + 57936 0.7 0.517913
Target:  5'- cCAGCgaguugagCACCGAGGccauggcccccaUGGUCGagGUCGCCg -3'
miRNA:   3'- aGUCG--------GUGGCUCC------------ACUAGCg-CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 58447 0.78 0.179029
Target:  5'- aUCGGUgGCCuuGGUGAUCGCGgcCACCa -3'
miRNA:   3'- -AGUCGgUGGcuCCACUAGCGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 58665 0.7 0.50773
Target:  5'- cCGGUgCACCGGGGUGcagcuuccAUCGCGgggucggcucgUCGCCg -3'
miRNA:   3'- aGUCG-GUGGCUCCAC--------UAGCGC-----------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 60929 0.66 0.739032
Target:  5'- -gAGCUcgGCCuuGGUGAUCGUcugCACCa -3'
miRNA:   3'- agUCGG--UGGcuCCACUAGCGca-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.