miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 3' -56.1 NC_005259.1 + 23366 0.68 0.63378
Target:  5'- -aGGCCGCCGAGGcaugGAUCGUcaaCAgCg -3'
miRNA:   3'- agUCGGUGGCUCCa---CUAGCGca-GUgG- -5'
23232 3' -56.1 NC_005259.1 + 24364 0.68 0.63378
Target:  5'- --cGCaCACCGAGGUcuGGUgGCGcUACCg -3'
miRNA:   3'- aguCG-GUGGCUCCA--CUAgCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 24553 0.66 0.769097
Target:  5'- cCAGaUCGgCGGGGUGuacUCGUGggCACCg -3'
miRNA:   3'- aGUC-GGUgGCUCCACu--AGCGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 25926 0.67 0.718463
Target:  5'- --cGCCGCCGGuccGGUGAgCGCa-CGCCg -3'
miRNA:   3'- aguCGGUGGCU---CCACUaGCGcaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 28015 0.73 0.376119
Target:  5'- -gGGUCGCCGGGGuUGcgCGCGUUggccaGCCa -3'
miRNA:   3'- agUCGGUGGCUCC-ACuaGCGCAG-----UGG- -5'
23232 3' -56.1 NC_005259.1 + 28229 0.67 0.697572
Target:  5'- --cGCCACCGucggcggcgGGGUGGUCGa-UCACg -3'
miRNA:   3'- aguCGGUGGC---------UCCACUAGCgcAGUGg -5'
23232 3' -56.1 NC_005259.1 + 30611 0.69 0.559387
Target:  5'- aCGGUCucGCCGuuucuGGUGAUCGagugaaUGUCGCCg -3'
miRNA:   3'- aGUCGG--UGGCu----CCACUAGC------GCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 31719 0.68 0.65515
Target:  5'- cCGGUCuucuCUGAGGUGAcCGCGcCuGCCg -3'
miRNA:   3'- aGUCGGu---GGCUCCACUaGCGCaG-UGG- -5'
23232 3' -56.1 NC_005259.1 + 33131 0.67 0.687031
Target:  5'- gCAGCCGCCGcGcGUGAUCuugcCGUagACCg -3'
miRNA:   3'- aGUCGGUGGCuC-CACUAGc---GCAg-UGG- -5'
23232 3' -56.1 NC_005259.1 + 33594 0.69 0.559387
Target:  5'- -gGGCCACCGAGGcgcGGUCGag-CugCa -3'
miRNA:   3'- agUCGGUGGCUCCa--CUAGCgcaGugG- -5'
23232 3' -56.1 NC_005259.1 + 34732 0.69 0.580481
Target:  5'- gUCGGggaaACCGuuGGUGAUCGUG-CGCCa -3'
miRNA:   3'- -AGUCgg--UGGCu-CCACUAGCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 36021 0.69 0.559387
Target:  5'- -uGGCCAgCGAGGUcgacauGAUCaGCGagGCCa -3'
miRNA:   3'- agUCGGUgGCUCCA------CUAG-CGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 36135 0.71 0.439122
Target:  5'- -gGGCCGCCGGGcUG-UC-CGUCGCCa -3'
miRNA:   3'- agUCGGUGGCUCcACuAGcGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 36437 0.72 0.420503
Target:  5'- gCAGCguCGCCGAGGUcGAcCGCGUCGa- -3'
miRNA:   3'- aGUCG--GUGGCUCCA-CUaGCGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 36945 0.73 0.335007
Target:  5'- gCuGUCACCGGGGUGccCGCGagACCg -3'
miRNA:   3'- aGuCGGUGGCUCCACuaGCGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 39089 0.68 0.63378
Target:  5'- aCAGUCcguugagcggGuuGAGGUGcugcaAUCGCGUCACg -3'
miRNA:   3'- aGUCGG----------UggCUCCAC-----UAGCGCAGUGg -5'
23232 3' -56.1 NC_005259.1 + 39773 0.7 0.50773
Target:  5'- gCAGCCugCugcuGGUGAUCG-GUgCGCCg -3'
miRNA:   3'- aGUCGGugGcu--CCACUAGCgCA-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 40886 0.73 0.376119
Target:  5'- cCGGCCACCGuGGcggGGUCggcaGCGUC-CCa -3'
miRNA:   3'- aGUCGGUGGCuCCa--CUAG----CGCAGuGG- -5'
23232 3' -56.1 NC_005259.1 + 45488 0.69 0.580481
Target:  5'- -uGGCCGCUGGuGGccuUGGUCGCuGUgGCCa -3'
miRNA:   3'- agUCGGUGGCU-CC---ACUAGCG-CAgUGG- -5'
23232 3' -56.1 NC_005259.1 + 45529 0.68 0.63378
Target:  5'- gUUGGCCGCCGuGGcugcgagcgGGUUGC-UCGCCg -3'
miRNA:   3'- -AGUCGGUGGCuCCa--------CUAGCGcAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.