Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23232 | 3' | -56.1 | NC_005259.1 | + | 23366 | 0.68 | 0.63378 |
Target: 5'- -aGGCCGCCGAGGcaugGAUCGUcaaCAgCg -3' miRNA: 3'- agUCGGUGGCUCCa---CUAGCGca-GUgG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 24364 | 0.68 | 0.63378 |
Target: 5'- --cGCaCACCGAGGUcuGGUgGCGcUACCg -3' miRNA: 3'- aguCG-GUGGCUCCA--CUAgCGCaGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 24553 | 0.66 | 0.769097 |
Target: 5'- cCAGaUCGgCGGGGUGuacUCGUGggCACCg -3' miRNA: 3'- aGUC-GGUgGCUCCACu--AGCGCa-GUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 25926 | 0.67 | 0.718463 |
Target: 5'- --cGCCGCCGGuccGGUGAgCGCa-CGCCg -3' miRNA: 3'- aguCGGUGGCU---CCACUaGCGcaGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 28015 | 0.73 | 0.376119 |
Target: 5'- -gGGUCGCCGGGGuUGcgCGCGUUggccaGCCa -3' miRNA: 3'- agUCGGUGGCUCC-ACuaGCGCAG-----UGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 28229 | 0.67 | 0.697572 |
Target: 5'- --cGCCACCGucggcggcgGGGUGGUCGa-UCACg -3' miRNA: 3'- aguCGGUGGC---------UCCACUAGCgcAGUGg -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 30611 | 0.69 | 0.559387 |
Target: 5'- aCGGUCucGCCGuuucuGGUGAUCGagugaaUGUCGCCg -3' miRNA: 3'- aGUCGG--UGGCu----CCACUAGC------GCAGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 31719 | 0.68 | 0.65515 |
Target: 5'- cCGGUCuucuCUGAGGUGAcCGCGcCuGCCg -3' miRNA: 3'- aGUCGGu---GGCUCCACUaGCGCaG-UGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 33131 | 0.67 | 0.687031 |
Target: 5'- gCAGCCGCCGcGcGUGAUCuugcCGUagACCg -3' miRNA: 3'- aGUCGGUGGCuC-CACUAGc---GCAg-UGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 33594 | 0.69 | 0.559387 |
Target: 5'- -gGGCCACCGAGGcgcGGUCGag-CugCa -3' miRNA: 3'- agUCGGUGGCUCCa--CUAGCgcaGugG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 34732 | 0.69 | 0.580481 |
Target: 5'- gUCGGggaaACCGuuGGUGAUCGUG-CGCCa -3' miRNA: 3'- -AGUCgg--UGGCu-CCACUAGCGCaGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 36021 | 0.69 | 0.559387 |
Target: 5'- -uGGCCAgCGAGGUcgacauGAUCaGCGagGCCa -3' miRNA: 3'- agUCGGUgGCUCCA------CUAG-CGCagUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 36135 | 0.71 | 0.439122 |
Target: 5'- -gGGCCGCCGGGcUG-UC-CGUCGCCa -3' miRNA: 3'- agUCGGUGGCUCcACuAGcGCAGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 36437 | 0.72 | 0.420503 |
Target: 5'- gCAGCguCGCCGAGGUcGAcCGCGUCGa- -3' miRNA: 3'- aGUCG--GUGGCUCCA-CUaGCGCAGUgg -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 36945 | 0.73 | 0.335007 |
Target: 5'- gCuGUCACCGGGGUGccCGCGagACCg -3' miRNA: 3'- aGuCGGUGGCUCCACuaGCGCagUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 39089 | 0.68 | 0.63378 |
Target: 5'- aCAGUCcguugagcggGuuGAGGUGcugcaAUCGCGUCACg -3' miRNA: 3'- aGUCGG----------UggCUCCAC-----UAGCGCAGUGg -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 39773 | 0.7 | 0.50773 |
Target: 5'- gCAGCCugCugcuGGUGAUCG-GUgCGCCg -3' miRNA: 3'- aGUCGGugGcu--CCACUAGCgCA-GUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 40886 | 0.73 | 0.376119 |
Target: 5'- cCGGCCACCGuGGcggGGUCggcaGCGUC-CCa -3' miRNA: 3'- aGUCGGUGGCuCCa--CUAG----CGCAGuGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 45488 | 0.69 | 0.580481 |
Target: 5'- -uGGCCGCUGGuGGccuUGGUCGCuGUgGCCa -3' miRNA: 3'- agUCGGUGGCU-CC---ACUAGCG-CAgUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 45529 | 0.68 | 0.63378 |
Target: 5'- gUUGGCCGCCGuGGcugcgagcgGGUUGC-UCGCCg -3' miRNA: 3'- -AGUCGGUGGCuCCa--------CUAGCGcAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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