miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 3' -56.1 NC_005259.1 + 6041 0.71 0.481669
Target:  5'- uUCAGCgaCACCGAcgagcucgugugcgcGGUGAUCGC--CGCCg -3'
miRNA:   3'- -AGUCG--GUGGCU---------------CCACUAGCGcaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 16413 0.7 0.485637
Target:  5'- gCAGcCCACCGAGGUGcccGUCgaGCGgcccaaaccgggCACCg -3'
miRNA:   3'- aGUC-GGUGGCUCCAC---UAG--CGCa-----------GUGG- -5'
23232 3' -56.1 NC_005259.1 + 39773 0.7 0.50773
Target:  5'- gCAGCCugCugcuGGUGAUCG-GUgCGCCg -3'
miRNA:   3'- aGUCGGugGcu--CCACUAGCgCA-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 58665 0.7 0.50773
Target:  5'- cCGGUgCACCGGGGUGcagcuuccAUCGCGgggucggcucgUCGCCg -3'
miRNA:   3'- aGUCG-GUGGCUCCAC--------UAGCGC-----------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 1906 0.7 0.50773
Target:  5'- -gAGCUGCCGAGGaag-CGCGcCGCCc -3'
miRNA:   3'- agUCGGUGGCUCCacuaGCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 67771 0.7 0.50773
Target:  5'- cCGGCCACCGAccacgcGGUGAccUUGUuggCACCg -3'
miRNA:   3'- aGUCGGUGGCU------CCACU--AGCGca-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 57936 0.7 0.517913
Target:  5'- cCAGCgaguugagCACCGAGGccauggcccccaUGGUCGagGUCGCCg -3'
miRNA:   3'- aGUCG--------GUGGCUCC------------ACUAGCg-CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 9993 0.7 0.528176
Target:  5'- -uGGCCAgCCGGGGacUGAUCcGCGUCGa- -3'
miRNA:   3'- agUCGGU-GGCUCC--ACUAG-CGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 63463 0.7 0.528176
Target:  5'- -uGGCCAaCCGc-GUGAUCGCGUCGa- -3'
miRNA:   3'- agUCGGU-GGCucCACUAGCGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 55036 0.7 0.538513
Target:  5'- -gGGCUGCCGAGGUGcUUGCcucgguggcaGUCugCg -3'
miRNA:   3'- agUCGGUGGCUCCACuAGCG----------CAGugG- -5'
23232 3' -56.1 NC_005259.1 + 12975 0.69 0.54892
Target:  5'- gUCGGaagcgcCCACCGuGGUGcUCGCGUuCGCa -3'
miRNA:   3'- -AGUC------GGUGGCuCCACuAGCGCA-GUGg -5'
23232 3' -56.1 NC_005259.1 + 30611 0.69 0.559387
Target:  5'- aCGGUCucGCCGuuucuGGUGAUCGagugaaUGUCGCCg -3'
miRNA:   3'- aGUCGG--UGGCu----CCACUAGC------GCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 33594 0.69 0.559387
Target:  5'- -gGGCCACCGAGGcgcGGUCGag-CugCa -3'
miRNA:   3'- agUCGGUGGCUCCa--CUAGCgcaGugG- -5'
23232 3' -56.1 NC_005259.1 + 36021 0.69 0.559387
Target:  5'- -uGGCCAgCGAGGUcgacauGAUCaGCGagGCCa -3'
miRNA:   3'- agUCGGUgGCUCCA------CUAG-CGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 45488 0.69 0.580481
Target:  5'- -uGGCCGCUGGuGGccuUGGUCGCuGUgGCCa -3'
miRNA:   3'- agUCGGUGGCU-CC---ACUAGCG-CAgUGG- -5'
23232 3' -56.1 NC_005259.1 + 34732 0.69 0.580481
Target:  5'- gUCGGggaaACCGuuGGUGAUCGUG-CGCCa -3'
miRNA:   3'- -AGUCgg--UGGCu-CCACUAGCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 2009 0.69 0.591092
Target:  5'- gCGGCCAUCG-GGUGG-CGCaccggCACCu -3'
miRNA:   3'- aGUCGGUGGCuCCACUaGCGca---GUGG- -5'
23232 3' -56.1 NC_005259.1 + 47609 0.69 0.591092
Target:  5'- gUCGGCgagGCUGAGGUucUUGuCGUCGCCg -3'
miRNA:   3'- -AGUCGg--UGGCUCCAcuAGC-GCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 19059 0.69 0.591092
Target:  5'- --cGCCACCGAugucGGUG-UCGCGguccggCGCUa -3'
miRNA:   3'- aguCGGUGGCU----CCACuAGCGCa-----GUGG- -5'
23232 3' -56.1 NC_005259.1 + 68566 0.69 0.591092
Target:  5'- -gAGCCaACCGAGGUGGaccUCGUauccggcgGcCACCg -3'
miRNA:   3'- agUCGG-UGGCUCCACU---AGCG--------CaGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.