Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23232 | 3' | -56.1 | NC_005259.1 | + | 45734 | 0.66 | 0.749169 |
Target: 5'- gCA-CCACCGAGGc---CGCG-CACCg -3' miRNA: 3'- aGUcGGUGGCUCCacuaGCGCaGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 60929 | 0.66 | 0.739032 |
Target: 5'- -gAGCUcgGCCuuGGUGAUCGUcugCACCa -3' miRNA: 3'- agUCGG--UGGcuCCACUAGCGca-GUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 11015 | 0.66 | 0.728793 |
Target: 5'- cCGGaCgCGCCGAGGcagGAguUCGCcgggugGUCACCg -3' miRNA: 3'- aGUC-G-GUGGCUCCa--CU--AGCG------CAGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 46589 | 0.67 | 0.718463 |
Target: 5'- --cGCCGcCCGAGGcGAgcagCGCGUCGu- -3' miRNA: 3'- aguCGGU-GGCUCCaCUa---GCGCAGUgg -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 25926 | 0.67 | 0.718463 |
Target: 5'- --cGCCGCCGGuccGGUGAgCGCa-CGCCg -3' miRNA: 3'- aguCGGUGGCU---CCACUaGCGcaGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 5553 | 0.67 | 0.718463 |
Target: 5'- -aGGCCGCgUGGGGUGGUgacgGCGagACCg -3' miRNA: 3'- agUCGGUG-GCUCCACUAg---CGCagUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 45488 | 0.69 | 0.580481 |
Target: 5'- -uGGCCGCUGGuGGccuUGGUCGCuGUgGCCa -3' miRNA: 3'- agUCGGUGGCU-CC---ACUAGCG-CAgUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 66931 | 0.67 | 0.708052 |
Target: 5'- --uGCUcgACCGGGGUGAgCGgGaCACCg -3' miRNA: 3'- aguCGG--UGGCUCCACUaGCgCaGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 28229 | 0.67 | 0.697572 |
Target: 5'- --cGCCACCGucggcggcgGGGUGGUCGa-UCACg -3' miRNA: 3'- aguCGGUGGC---------UCCACUAGCgcAGUGg -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 52403 | 0.67 | 0.697572 |
Target: 5'- -gGGCCAUCGAGGUGugggCGC-UCgACUc -3' miRNA: 3'- agUCGGUGGCUCCACua--GCGcAG-UGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 33131 | 0.67 | 0.687031 |
Target: 5'- gCAGCCGCCGcGcGUGAUCuugcCGUagACCg -3' miRNA: 3'- aGUCGGUGGCuC-CACUAGc---GCAg-UGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 65562 | 0.67 | 0.685974 |
Target: 5'- aUCGGCCcauagacACCGAGG-GAcggGCGUCaaACCg -3' miRNA: 3'- -AGUCGG-------UGGCUCCaCUag-CGCAG--UGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 53725 | 0.67 | 0.67644 |
Target: 5'- --cGCCGCUGAuGGUGA---UGUCGCCg -3' miRNA: 3'- aguCGGUGGCU-CCACUagcGCAGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 31719 | 0.68 | 0.65515 |
Target: 5'- cCGGUCuucuCUGAGGUGAcCGCGcCuGCCg -3' miRNA: 3'- aGUCGGu---GGCUCCACUaGCGCaG-UGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 16697 | 0.73 | 0.342159 |
Target: 5'- -uGGgCACCGAGGUGAccgccgagcaggUCGCGcucugccUCGCCa -3' miRNA: 3'- agUCgGUGGCUCCACU------------AGCGC-------AGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 47794 | 0.71 | 0.458202 |
Target: 5'- gCAGCgGuCCGAcGGUGAgUCGCGagACCu -3' miRNA: 3'- aGUCGgU-GGCU-CCACU-AGCGCagUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 47900 | 0.71 | 0.448606 |
Target: 5'- gUCGGCuCGuuGAGcGccuUGAUgGCGUCGCCg -3' miRNA: 3'- -AGUCG-GUggCUC-C---ACUAgCGCAGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 36135 | 0.71 | 0.439122 |
Target: 5'- -gGGCCGCCGGGcUG-UC-CGUCGCCa -3' miRNA: 3'- agUCGGUGGCUCcACuAGcGCAGUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 16176 | 0.71 | 0.439122 |
Target: 5'- -uGGCCGCCGAGGUccaagaGAUCaUGUcCACCc -3' miRNA: 3'- agUCGGUGGCUCCA------CUAGcGCA-GUGG- -5' |
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23232 | 3' | -56.1 | NC_005259.1 | + | 36437 | 0.72 | 0.420503 |
Target: 5'- gCAGCguCGCCGAGGUcGAcCGCGUCGa- -3' miRNA: 3'- aGUCG--GUGGCUCCA-CUaGCGCAGUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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