miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 3' -56.1 NC_005259.1 + 28015 0.73 0.376119
Target:  5'- -gGGUCGCCGGGGuUGcgCGCGUUggccaGCCa -3'
miRNA:   3'- agUCGGUGGCUCC-ACuaGCGCAG-----UGG- -5'
23232 3' -56.1 NC_005259.1 + 24553 0.66 0.769097
Target:  5'- cCAGaUCGgCGGGGUGuacUCGUGggCACCg -3'
miRNA:   3'- aGUC-GGUgGCUCCACu--AGCGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 4476 0.71 0.477717
Target:  5'- -aGGCCAUCGGcgguggaccauGGUGAUCGCcaccgCGCCg -3'
miRNA:   3'- agUCGGUGGCU-----------CCACUAGCGca---GUGG- -5'
23232 3' -56.1 NC_005259.1 + 21616 0.71 0.467908
Target:  5'- aCA-CCACCGAGGcUGuGUCGCGcggaguguUCGCCg -3'
miRNA:   3'- aGUcGGUGGCUCC-AC-UAGCGC--------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 50795 0.71 0.458202
Target:  5'- gUCGGaCCAUCGAGGUucuuguucGGUCaGCGcgCACCa -3'
miRNA:   3'- -AGUC-GGUGGCUCCA--------CUAG-CGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 47794 0.71 0.458202
Target:  5'- gCAGCgGuCCGAcGGUGAgUCGCGagACCu -3'
miRNA:   3'- aGUCGgU-GGCU-CCACU-AGCGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 47900 0.71 0.448606
Target:  5'- gUCGGCuCGuuGAGcGccuUGAUgGCGUCGCCg -3'
miRNA:   3'- -AGUCG-GUggCUC-C---ACUAgCGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 36135 0.71 0.439122
Target:  5'- -gGGCCGCCGGGcUG-UC-CGUCGCCa -3'
miRNA:   3'- agUCGGUGGCUCcACuAGcGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 16176 0.71 0.439122
Target:  5'- -uGGCCGCCGAGGUccaagaGAUCaUGUcCACCc -3'
miRNA:   3'- agUCGGUGGCUCCA------CUAGcGCA-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 36437 0.72 0.420503
Target:  5'- gCAGCguCGCCGAGGUcGAcCGCGUCGa- -3'
miRNA:   3'- aGUCG--GUGGCUCCA-CUaGCGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 40886 0.73 0.376119
Target:  5'- cCGGCCACCGuGGcggGGUCggcaGCGUC-CCa -3'
miRNA:   3'- aGUCGGUGGCuCCa--CUAG----CGCAGuGG- -5'
23232 3' -56.1 NC_005259.1 + 47468 1.13 0.000662
Target:  5'- gUCAGCCACCGAGGUGAUCGCGUCACCg -3'
miRNA:   3'- -AGUCGGUGGCUCCACUAGCGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 47275 0.73 0.359273
Target:  5'- cCAGCgCACCGAGcaGAcCGCcGUCGCCg -3'
miRNA:   3'- aGUCG-GUGGCUCcaCUaGCG-CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 16697 0.73 0.342159
Target:  5'- -uGGgCACCGAGGUGAccgccgagcaggUCGCGcucugccUCGCCa -3'
miRNA:   3'- agUCgGUGGCUCCACU------------AGCGC-------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 53152 0.73 0.335007
Target:  5'- aUCAGCCgcuacGCCGAGGccGAUCuCGcCACCg -3'
miRNA:   3'- -AGUCGG-----UGGCUCCa-CUAGcGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 36945 0.73 0.335007
Target:  5'- gCuGUCACCGGGGUGccCGCGagACCg -3'
miRNA:   3'- aGuCGGUGGCUCCACuaGCGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 19717 0.77 0.193149
Target:  5'- gCuGCCGCCGAGGUGAUCGaCGgggacuaguugacUUACCc -3'
miRNA:   3'- aGuCGGUGGCUCCACUAGC-GC-------------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 46321 0.78 0.183792
Target:  5'- gCGGCC-CCGAGG--GUCGCGUCGCg -3'
miRNA:   3'- aGUCGGuGGCUCCacUAGCGCAGUGg -5'
23232 3' -56.1 NC_005259.1 + 58447 0.78 0.179029
Target:  5'- aUCGGUgGCCuuGGUGAUCGCGgcCACCa -3'
miRNA:   3'- -AGUCGgUGGcuCCACUAGCGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 63179 0.81 0.104438
Target:  5'- --cGCCGCCGAGGUGAUCGCaccccggucGUgCGCCu -3'
miRNA:   3'- aguCGGUGGCUCCACUAGCG---------CA-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.