miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 3' -56.1 NC_005259.1 + 903 0.68 0.644471
Target:  5'- ----aCACCGAGGUGGUgcccgGCGaUCACCu -3'
miRNA:   3'- agucgGUGGCUCCACUAg----CGC-AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 1906 0.7 0.50773
Target:  5'- -gAGCUGCCGAGGaag-CGCGcCGCCc -3'
miRNA:   3'- agUCGGUGGCUCCacuaGCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 2009 0.69 0.591092
Target:  5'- gCGGCCAUCG-GGUGG-CGCaccggCACCu -3'
miRNA:   3'- aGUCGGUGGCuCCACUaGCGca---GUGG- -5'
23232 3' -56.1 NC_005259.1 + 4476 0.71 0.477717
Target:  5'- -aGGCCAUCGGcgguggaccauGGUGAUCGCcaccgCGCCg -3'
miRNA:   3'- agUCGGUGGCU-----------CCACUAGCGca---GUGG- -5'
23232 3' -56.1 NC_005259.1 + 5553 0.67 0.718463
Target:  5'- -aGGCCGCgUGGGGUGGUgacgGCGagACCg -3'
miRNA:   3'- agUCGGUG-GCUCCACUAg---CGCagUGG- -5'
23232 3' -56.1 NC_005259.1 + 6041 0.71 0.481669
Target:  5'- uUCAGCgaCACCGAcgagcucgugugcgcGGUGAUCGC--CGCCg -3'
miRNA:   3'- -AGUCG--GUGGCU---------------CCACUAGCGcaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 6440 0.66 0.759194
Target:  5'- gUCGG-CACCGucGcgcUGAUCggcaGCGUCGCCg -3'
miRNA:   3'- -AGUCgGUGGCucC---ACUAG----CGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 9993 0.7 0.528176
Target:  5'- -uGGCCAgCCGGGGacUGAUCcGCGUCGa- -3'
miRNA:   3'- agUCGGU-GGCUCC--ACUAG-CGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 10777 0.68 0.63378
Target:  5'- -gGGUCAUCGAGGUGGgcCGCGagCGCa -3'
miRNA:   3'- agUCGGUGGCUCCACUa-GCGCa-GUGg -5'
23232 3' -56.1 NC_005259.1 + 11015 0.66 0.728793
Target:  5'- cCGGaCgCGCCGAGGcagGAguUCGCcgggugGUCACCg -3'
miRNA:   3'- aGUC-G-GUGGCUCCa--CU--AGCG------CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 12975 0.69 0.54892
Target:  5'- gUCGGaagcgcCCACCGuGGUGcUCGCGUuCGCa -3'
miRNA:   3'- -AGUC------GGUGGCuCCACuAGCGCA-GUGg -5'
23232 3' -56.1 NC_005259.1 + 16176 0.71 0.439122
Target:  5'- -uGGCCGCCGAGGUccaagaGAUCaUGUcCACCc -3'
miRNA:   3'- agUCGGUGGCUCCA------CUAGcGCA-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 16413 0.7 0.485637
Target:  5'- gCAGcCCACCGAGGUGcccGUCgaGCGgcccaaaccgggCACCg -3'
miRNA:   3'- aGUC-GGUGGCUCCAC---UAG--CGCa-----------GUGG- -5'
23232 3' -56.1 NC_005259.1 + 16697 0.73 0.342159
Target:  5'- -uGGgCACCGAGGUGAccgccgagcaggUCGCGcucugccUCGCCa -3'
miRNA:   3'- agUCgGUGGCUCCACU------------AGCGC-------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 19059 0.69 0.591092
Target:  5'- --cGCCACCGAugucGGUG-UCGCGguccggCGCUa -3'
miRNA:   3'- aguCGGUGGCU----CCACuAGCGCa-----GUGG- -5'
23232 3' -56.1 NC_005259.1 + 19717 0.77 0.193149
Target:  5'- gCuGCCGCCGAGGUGAUCGaCGgggacuaguugacUUACCc -3'
miRNA:   3'- aGuCGGUGGCUCCACUAGC-GC-------------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 20773 0.67 0.708052
Target:  5'- cCGcCCACCG-GGUGG-CGCGUCgacagcaagaGCCa -3'
miRNA:   3'- aGUcGGUGGCuCCACUaGCGCAG----------UGG- -5'
23232 3' -56.1 NC_005259.1 + 21381 0.68 0.644471
Target:  5'- cCAGUCGCCGAGGcGGUgcaaCGCG-CAUg -3'
miRNA:   3'- aGUCGGUGGCUCCaCUA----GCGCaGUGg -5'
23232 3' -56.1 NC_005259.1 + 21616 0.71 0.467908
Target:  5'- aCA-CCACCGAGGcUGuGUCGCGcggaguguUCGCCg -3'
miRNA:   3'- aGUcGGUGGCUCC-AC-UAGCGC--------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 23006 0.68 0.65515
Target:  5'- -aGGUCACCGAGGacgGcUCG-GUCAUCg -3'
miRNA:   3'- agUCGGUGGCUCCa--CuAGCgCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.