miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 3' -56.1 NC_005259.1 + 68566 0.69 0.591092
Target:  5'- -gAGCCaACCGAGGUGGaccUCGUauccggcgGcCACCg -3'
miRNA:   3'- agUCGG-UGGCUCCACU---AGCG--------CaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 67771 0.7 0.50773
Target:  5'- cCGGCCACCGAccacgcGGUGAccUUGUuggCACCg -3'
miRNA:   3'- aGUCGGUGGCU------CCACU--AGCGca-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 66931 0.67 0.708052
Target:  5'- --uGCUcgACCGGGGUGAgCGgGaCACCg -3'
miRNA:   3'- aguCGG--UGGCUCCACUaGCgCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 65995 0.68 0.612404
Target:  5'- gCAGCCGCuCGAcGUGGU-GCG-CACCc -3'
miRNA:   3'- aGUCGGUG-GCUcCACUAgCGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 65562 0.67 0.685974
Target:  5'- aUCGGCCcauagacACCGAGG-GAcggGCGUCaaACCg -3'
miRNA:   3'- -AGUCGG-------UGGCUCCaCUag-CGCAG--UGG- -5'
23232 3' -56.1 NC_005259.1 + 63463 0.7 0.528176
Target:  5'- -uGGCCAaCCGc-GUGAUCGCGUCGa- -3'
miRNA:   3'- agUCGGU-GGCucCACUAGCGCAGUgg -5'
23232 3' -56.1 NC_005259.1 + 63179 0.81 0.104438
Target:  5'- --cGCCGCCGAGGUGAUCGCaccccggucGUgCGCCu -3'
miRNA:   3'- aguCGGUGGCUCCACUAGCG---------CA-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 62122 0.88 0.034882
Target:  5'- gUCAGUCACCGAGGUGAUCGUcUCgACCa -3'
miRNA:   3'- -AGUCGGUGGCUCCACUAGCGcAG-UGG- -5'
23232 3' -56.1 NC_005259.1 + 60929 0.66 0.739032
Target:  5'- -gAGCUcgGCCuuGGUGAUCGUcugCACCa -3'
miRNA:   3'- agUCGG--UGGcuCCACUAGCGca-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 58665 0.7 0.50773
Target:  5'- cCGGUgCACCGGGGUGcagcuuccAUCGCGgggucggcucgUCGCCg -3'
miRNA:   3'- aGUCG-GUGGCUCCAC--------UAGCGC-----------AGUGG- -5'
23232 3' -56.1 NC_005259.1 + 58447 0.78 0.179029
Target:  5'- aUCGGUgGCCuuGGUGAUCGCGgcCACCa -3'
miRNA:   3'- -AGUCGgUGGcuCCACUAGCGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 57936 0.7 0.517913
Target:  5'- cCAGCgaguugagCACCGAGGccauggcccccaUGGUCGagGUCGCCg -3'
miRNA:   3'- aGUCG--------GUGGCUCC------------ACUAGCg-CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 55036 0.7 0.538513
Target:  5'- -gGGCUGCCGAGGUGcUUGCcucgguggcaGUCugCg -3'
miRNA:   3'- agUCGGUGGCUCCACuAGCG----------CAGugG- -5'
23232 3' -56.1 NC_005259.1 + 53725 0.67 0.67644
Target:  5'- --cGCCGCUGAuGGUGA---UGUCGCCg -3'
miRNA:   3'- aguCGGUGGCU-CCACUagcGCAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 53152 0.73 0.335007
Target:  5'- aUCAGCCgcuacGCCGAGGccGAUCuCGcCACCg -3'
miRNA:   3'- -AGUCGG-----UGGCUCCa-CUAGcGCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 52403 0.67 0.697572
Target:  5'- -gGGCCAUCGAGGUGugggCGC-UCgACUc -3'
miRNA:   3'- agUCGGUGGCUCCACua--GCGcAG-UGG- -5'
23232 3' -56.1 NC_005259.1 + 52027 0.68 0.644471
Target:  5'- -aGGCCGCCGcacUGcgCGCuGUCGCCg -3'
miRNA:   3'- agUCGGUGGCuccACuaGCG-CAGUGG- -5'
23232 3' -56.1 NC_005259.1 + 51488 0.68 0.612404
Target:  5'- aCA-CCGCCGGGGauaGGUCGaCGcCGCCg -3'
miRNA:   3'- aGUcGGUGGCUCCa--CUAGC-GCaGUGG- -5'
23232 3' -56.1 NC_005259.1 + 50795 0.71 0.458202
Target:  5'- gUCGGaCCAUCGAGGUucuuguucGGUCaGCGcgCACCa -3'
miRNA:   3'- -AGUC-GGUGGCUCCA--------CUAG-CGCa-GUGG- -5'
23232 3' -56.1 NC_005259.1 + 47900 0.71 0.448606
Target:  5'- gUCGGCuCGuuGAGcGccuUGAUgGCGUCGCCg -3'
miRNA:   3'- -AGUCG-GUggCUC-C---ACUAgCGCAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.