miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 5' -54.7 NC_005259.1 + 64444 0.7 0.554165
Target:  5'- uGCcGGG--GCGCUGCCCUUgg-GGCg -3'
miRNA:   3'- -CGuCCUugUGCGACGGGAGaaaCCGg -5'
23232 5' -54.7 NC_005259.1 + 55573 0.7 0.553096
Target:  5'- aGCAGGAACaucaccgccGCGCUGgCCacgcgauaccacgUCUcgcgcgccUUGGCCg -3'
miRNA:   3'- -CGUCCUUG---------UGCGACgGG-------------AGA--------AACCGG- -5'
23232 5' -54.7 NC_005259.1 + 68704 0.71 0.522391
Target:  5'- gGCGGGcAGCGCGUcggUGCCCgagaaCUggGGUCg -3'
miRNA:   3'- -CGUCC-UUGUGCG---ACGGGa----GAaaCCGG- -5'
23232 5' -54.7 NC_005259.1 + 776 0.71 0.491346
Target:  5'- cGCGccGAgGCgGCUGCCCUCgguugggUGGCCa -3'
miRNA:   3'- -CGUccUUgUG-CGACGGGAGaa-----ACCGG- -5'
23232 5' -54.7 NC_005259.1 + 21445 0.71 0.491346
Target:  5'- uGCAcauGGAGaACGCUGCCCgugaggCUUUGaaGCCg -3'
miRNA:   3'- -CGU---CCUUgUGCGACGGGa-----GAAAC--CGG- -5'
23232 5' -54.7 NC_005259.1 + 28360 0.72 0.47113
Target:  5'- --cGGuGCugGCUGCCCcacCUcgGGCCg -3'
miRNA:   3'- cguCCuUGugCGACGGGa--GAaaCCGG- -5'
23232 5' -54.7 NC_005259.1 + 37502 0.72 0.461182
Target:  5'- gGCGGuGAGCACgauGCUGCCCgacgagaagaUCgucgGGCCg -3'
miRNA:   3'- -CGUC-CUUGUG---CGACGGG----------AGaaa-CCGG- -5'
23232 5' -54.7 NC_005259.1 + 35059 0.73 0.385922
Target:  5'- cGCcGG-ACACGCcGCCCUUgcugacggUGGCCu -3'
miRNA:   3'- -CGuCCuUGUGCGaCGGGAGaa------ACCGG- -5'
23232 5' -54.7 NC_005259.1 + 44295 0.74 0.363267
Target:  5'- aGCGcGAGCGgGUUGCCCUCUUUGacgagcguguugagcGCCg -3'
miRNA:   3'- -CGUcCUUGUgCGACGGGAGAAAC---------------CGG- -5'
23232 5' -54.7 NC_005259.1 + 47502 1.14 0.000594
Target:  5'- gGCAGGAACACGCUGCCCUCUUUGGCCa -3'
miRNA:   3'- -CGUCCUUGUGCGACGGGAGAAACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.