miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 5' -54.7 NC_005259.1 + 50633 0.69 0.596258
Target:  5'- aGCGGuccaugcGAuUACGCcGCCCUCgg-GGCCa -3'
miRNA:   3'- -CGUC-------CUuGUGCGaCGGGAGaaaCCGG- -5'
23232 5' -54.7 NC_005259.1 + 55573 0.7 0.553096
Target:  5'- aGCAGGAACaucaccgccGCGCUGgCCacgcgauaccacgUCUcgcgcgccUUGGCCg -3'
miRNA:   3'- -CGUCCUUG---------UGCGACgGG-------------AGA--------AACCGG- -5'
23232 5' -54.7 NC_005259.1 + 58813 0.66 0.777425
Target:  5'- gGCGGGcuCGCGCUGCucggcacCCUCgcc-GCCc -3'
miRNA:   3'- -CGUCCuuGUGCGACG-------GGAGaaacCGG- -5'
23232 5' -54.7 NC_005259.1 + 59858 0.66 0.788255
Target:  5'- -gAGGGAuCAUGCUgGCUCguugUGGCCg -3'
miRNA:   3'- cgUCCUU-GUGCGA-CGGGagaaACCGG- -5'
23232 5' -54.7 NC_005259.1 + 60177 0.66 0.794082
Target:  5'- gGCGGcGAACGC-CUGCUCgaccgaccgGGCCa -3'
miRNA:   3'- -CGUC-CUUGUGcGACGGGagaaa----CCGG- -5'
23232 5' -54.7 NC_005259.1 + 61657 0.67 0.737683
Target:  5'- uCAGcucAACGCGCUGCCCaUCggcGGCa -3'
miRNA:   3'- cGUCc--UUGUGCGACGGG-AGaaaCCGg -5'
23232 5' -54.7 NC_005259.1 + 63693 0.66 0.76843
Target:  5'- cCGGGGAUcuGCGcCUGCCCagcggggaUCgg-GGCCu -3'
miRNA:   3'- cGUCCUUG--UGC-GACGGG--------AGaaaCCGG- -5'
23232 5' -54.7 NC_005259.1 + 64444 0.7 0.554165
Target:  5'- uGCcGGG--GCGCUGCCCUUgg-GGCg -3'
miRNA:   3'- -CGuCCUugUGCGACGGGAGaaaCCGg -5'
23232 5' -54.7 NC_005259.1 + 67441 0.68 0.673665
Target:  5'- cGCuuGAGCGCGUcggggaUGCCCUUUUcGGCg -3'
miRNA:   3'- -CGucCUUGUGCG------ACGGGAGAAaCCGg -5'
23232 5' -54.7 NC_005259.1 + 68704 0.71 0.522391
Target:  5'- gGCGGGcAGCGCGUcggUGCCCgagaaCUggGGUCg -3'
miRNA:   3'- -CGUCC-UUGUGCG---ACGGGa----GAaaCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.