miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23232 5' -54.7 NC_005259.1 + 776 0.71 0.491346
Target:  5'- cGCGccGAgGCgGCUGCCCUCgguugggUGGCCa -3'
miRNA:   3'- -CGUccUUgUG-CGACGGGAGaa-----ACCGG- -5'
23232 5' -54.7 NC_005259.1 + 14865 0.68 0.695274
Target:  5'- cGCgAGGuuCGCGCUGCCCgagcc-GCCg -3'
miRNA:   3'- -CG-UCCuuGUGCGACGGGagaaacCGG- -5'
23232 5' -54.7 NC_005259.1 + 20527 0.68 0.6519
Target:  5'- aGCAcGggUGCGCUGCCCgcagcgUGGUg -3'
miRNA:   3'- -CGUcCuuGUGCGACGGGagaa--ACCGg -5'
23232 5' -54.7 NC_005259.1 + 21445 0.71 0.491346
Target:  5'- uGCAcauGGAGaACGCUGCCCgugaggCUUUGaaGCCg -3'
miRNA:   3'- -CGU---CCUUgUGCGACGGGa-----GAAAC--CGG- -5'
23232 5' -54.7 NC_005259.1 + 26328 0.66 0.807441
Target:  5'- uCGGGGucGCACagauaGCacGCCCUCg--GGCCg -3'
miRNA:   3'- cGUCCU--UGUG-----CGa-CGGGAGaaaCCGG- -5'
23232 5' -54.7 NC_005259.1 + 26790 0.68 0.683413
Target:  5'- --cGGAACAccagcgcCGCcGCCCgg-UUGGCCg -3'
miRNA:   3'- cguCCUUGU-------GCGaCGGGagaAACCGG- -5'
23232 5' -54.7 NC_005259.1 + 28157 0.68 0.680168
Target:  5'- --cGGccucGACGCGCUGCCCUUgacguaguccggUGGCg -3'
miRNA:   3'- cguCC----UUGUGCGACGGGAGaa----------ACCGg -5'
23232 5' -54.7 NC_005259.1 + 28360 0.72 0.47113
Target:  5'- --cGGuGCugGCUGCCCcacCUcgGGCCg -3'
miRNA:   3'- cguCCuUGugCGACGGGa--GAaaCCGG- -5'
23232 5' -54.7 NC_005259.1 + 32177 0.66 0.788255
Target:  5'- cGCGuGAGCuCGCUGCgcgCCUCggucugcgacUUGGCCu -3'
miRNA:   3'- -CGUcCUUGuGCGACG---GGAGa---------AACCGG- -5'
23232 5' -54.7 NC_005259.1 + 32528 0.68 0.684494
Target:  5'- gGCGGGcGGCAgGCuUGaCCUUgcugUUGGCCg -3'
miRNA:   3'- -CGUCC-UUGUgCG-ACgGGAGa---AACCGG- -5'
23232 5' -54.7 NC_005259.1 + 35059 0.73 0.385922
Target:  5'- cGCcGG-ACACGCcGCCCUUgcugacggUGGCCu -3'
miRNA:   3'- -CGuCCuUGUGCGaCGGGAGaa------ACCGG- -5'
23232 5' -54.7 NC_005259.1 + 36653 0.66 0.807441
Target:  5'- uCAGcGAGC-CGCcGCCCUCgcc-GCCg -3'
miRNA:   3'- cGUC-CUUGuGCGaCGGGAGaaacCGG- -5'
23232 5' -54.7 NC_005259.1 + 37502 0.72 0.461182
Target:  5'- gGCGGuGAGCACgauGCUGCCCgacgagaagaUCgucgGGCCg -3'
miRNA:   3'- -CGUC-CUUGUG---CGACGGG----------AGaaa-CCGG- -5'
23232 5' -54.7 NC_005259.1 + 38583 0.7 0.575664
Target:  5'- uCAGGAugAUGCUGCCCgauccGGUg -3'
miRNA:   3'- cGUCCUugUGCGACGGGagaaaCCGg -5'
23232 5' -54.7 NC_005259.1 + 42039 0.68 0.662797
Target:  5'- uCGGGucGACuGCGCUGUCCUCggggUGGgCg -3'
miRNA:   3'- cGUCC--UUG-UGCGACGGGAGaa--ACCgG- -5'
23232 5' -54.7 NC_005259.1 + 44295 0.74 0.363267
Target:  5'- aGCGcGAGCGgGUUGCCCUCUUUGacgagcguguugagcGCCg -3'
miRNA:   3'- -CGUcCUUGUgCGACGGGAGAAAC---------------CGG- -5'
23232 5' -54.7 NC_005259.1 + 44463 0.67 0.716643
Target:  5'- cCGGGGAUGcCGCcGCCCUggccgGGCCa -3'
miRNA:   3'- cGUCCUUGU-GCGaCGGGAgaaa-CCGG- -5'
23232 5' -54.7 NC_005259.1 + 47502 1.14 0.000594
Target:  5'- gGCAGGAACACGCUGCCCUCUUUGGCCa -3'
miRNA:   3'- -CGUCCUUGUGCGACGGGAGAAACCGG- -5'
23232 5' -54.7 NC_005259.1 + 47635 0.66 0.792146
Target:  5'- cGCcGaGGGCA-GCgagGCCCUCUUugaacgugcuguugaUGGCCu -3'
miRNA:   3'- -CGuC-CUUGUgCGa--CGGGAGAA---------------ACCGG- -5'
23232 5' -54.7 NC_005259.1 + 49987 0.67 0.748052
Target:  5'- cGCAcGGAuCGCgugcggacgGCUGCCCUCgugcacgGGCg -3'
miRNA:   3'- -CGU-CCUuGUG---------CGACGGGAGaaa----CCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.