miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 20245 0.73 0.191534
Target:  5'- cCGCACCcuguGC-GACaCGCCG-CGCCGGg -3'
miRNA:   3'- -GCGUGGcu--CGuCUG-GCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 20454 0.67 0.457893
Target:  5'- aCGaGCCGGGguGgcucggaugACCGCCGUCGaCCu- -3'
miRNA:   3'- -GCgUGGCUCguC---------UGGCGGCAGC-GGcc -5'
23233 5' -61.6 NC_005259.1 + 22522 0.69 0.327413
Target:  5'- gCGCACCGucgccggugauuuccAGCAGuCCGaCC-UCGCCGa -3'
miRNA:   3'- -GCGUGGC---------------UCGUCuGGC-GGcAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 22674 0.74 0.16889
Target:  5'- aCGCACUGAccgccGCcGAuuuccCCGCCGUCGCCGu -3'
miRNA:   3'- -GCGUGGCU-----CGuCU-----GGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 22754 0.67 0.421767
Target:  5'- gCGUACCGAaaCGGcACCGCCaaggCGCUGGu -3'
miRNA:   3'- -GCGUGGCUc-GUC-UGGCGGca--GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 23441 0.69 0.31714
Target:  5'- cCGcCACCGccaAGCAGAUUGCUuUCGCaCGGg -3'
miRNA:   3'- -GC-GUGGC---UCGUCUGGCGGcAGCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 23674 0.68 0.374195
Target:  5'- cCGCcgaccCCGAGCAGGCgcacgcagacuaccgCGUCGUgaucgCGCCGGa -3'
miRNA:   3'- -GCGu----GGCUCGUCUG---------------GCGGCA-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 23895 0.67 0.457893
Target:  5'- cCGC-CCGAGCcgccgcGcCCGCCGUCGaaauacaaCGGu -3'
miRNA:   3'- -GCGuGGCUCGu-----CuGGCGGCAGCg-------GCC- -5'
23233 5' -61.6 NC_005259.1 + 24115 0.72 0.227679
Target:  5'- gGgACCGGGCGGggacuacaccGCCGCCGcccugcUCGCCGa -3'
miRNA:   3'- gCgUGGCUCGUC----------UGGCGGC------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 24834 0.67 0.421767
Target:  5'- cCGCACCGAccaaGCAGuCCGUgCGcuaCGCCGa -3'
miRNA:   3'- -GCGUGGCU----CGUCuGGCG-GCa--GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 25363 0.68 0.362883
Target:  5'- -aCGCCGAacgcaCAGACCGCUGUUcgGCUGGa -3'
miRNA:   3'- gcGUGGCUc----GUCUGGCGGCAG--CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 25913 0.67 0.434217
Target:  5'- cCGC-CUGAGCcgccGCCGCCGguccggugagcgcaCGCCGGu -3'
miRNA:   3'- -GCGuGGCUCGuc--UGGCGGCa-------------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 26067 0.74 0.16889
Target:  5'- cCGcCGCCGAGCAGuCCcccgagGCCGcCGCCGa -3'
miRNA:   3'- -GC-GUGGCUCGUCuGG------CGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 26108 0.87 0.01819
Target:  5'- ---cCCGAGCAGACCGCCGcCGCCGGu -3'
miRNA:   3'- gcguGGCUCGUCUGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 26434 0.69 0.339453
Target:  5'- aCGCaccGCCGAGCGGGCgGgCCGguggGCCGa -3'
miRNA:   3'- -GCG---UGGCUCGUCUGgC-GGCag--CGGCc -5'
23233 5' -61.6 NC_005259.1 + 27178 0.67 0.439618
Target:  5'- gGCGauGAGCAGGCUGC-GaCGCUGGa -3'
miRNA:   3'- gCGUggCUCGUCUGGCGgCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 27208 0.67 0.421767
Target:  5'- cCGCACCgcgagcucgguGAGCGGGCCGaaaUCGCCa- -3'
miRNA:   3'- -GCGUGG-----------CUCGUCUGGCggcAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 27276 0.67 0.439618
Target:  5'- aCGcCGCCuuGAGCc-GCCGCUGcacgCGCCGGa -3'
miRNA:   3'- -GC-GUGG--CUCGucUGGCGGCa---GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 28749 0.69 0.347139
Target:  5'- aCGCGcCCGAGCgugAGAUCGUCGccggUGCCGa -3'
miRNA:   3'- -GCGU-GGCUCG---UCUGGCGGCa---GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 30081 0.66 0.514989
Target:  5'- -aCAcCCGAuGUcGACCGCCcUCGUCGGa -3'
miRNA:   3'- gcGU-GGCU-CGuCUGGCGGcAGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.