miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 8954 0.67 0.413006
Target:  5'- gCGCGCCGuGGaCGGGCa-CCGU-GCCGGg -3'
miRNA:   3'- -GCGUGGC-UC-GUCUGgcGGCAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 9711 0.66 0.476566
Target:  5'- gGCACCGuccuCGGGCCgGUCGagcUCGCCGa -3'
miRNA:   3'- gCGUGGCuc--GUCUGG-CGGC---AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 10084 0.66 0.495609
Target:  5'- aCGCcgaCGAGUAGACC-CCGagGCCa- -3'
miRNA:   3'- -GCGug-GCUCGUCUGGcGGCagCGGcc -5'
23233 5' -61.6 NC_005259.1 + 11006 0.76 0.117759
Target:  5'- gGCACCGcGcCGGACgCGCCGaggcaggaguUCGCCGGg -3'
miRNA:   3'- gCGUGGCuC-GUCUG-GCGGC----------AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 11308 0.69 0.309952
Target:  5'- gCGUgagGCCGAGaCGGGCgCGCagcuCGUCGUCGGu -3'
miRNA:   3'- -GCG---UGGCUC-GUCUG-GCG----GCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 12213 0.71 0.250825
Target:  5'- uGCACCG-GCGcACCGCCcgcUgGCCGGg -3'
miRNA:   3'- gCGUGGCuCGUcUGGCGGc--AgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 13440 0.71 0.250825
Target:  5'- cCGCGCUaGGCGuGACCGUCGgcgcggCGCUGGu -3'
miRNA:   3'- -GCGUGGcUCGU-CUGGCGGCa-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 14334 0.74 0.148672
Target:  5'- cCGC-CCGcguGCGGGCCGCCGaCGCCa- -3'
miRNA:   3'- -GCGuGGCu--CGUCUGGCGGCaGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 14558 0.66 0.495609
Target:  5'- gGCagGCCGAGCggGGACCGgCGaacaccaucgCGCUGGc -3'
miRNA:   3'- gCG--UGGCUCG--UCUGGCgGCa---------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 14879 0.66 0.514989
Target:  5'- uGC-CCGAGCc-GCCGCCGUauggucaaGCCa- -3'
miRNA:   3'- gCGuGGCUCGucUGGCGGCAg-------CGGcc -5'
23233 5' -61.6 NC_005259.1 + 15531 0.73 0.173218
Target:  5'- aGCACU---CAGGCCGCCGUCacugGCCGGu -3'
miRNA:   3'- gCGUGGcucGUCUGGCGGCAG----CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 16459 0.67 0.413006
Target:  5'- gGCAUCGGuaccccgccGCAGAUCGCCGUCaa-GGg -3'
miRNA:   3'- gCGUGGCU---------CGUCUGGCGGCAGcggCC- -5'
23233 5' -61.6 NC_005259.1 + 16567 0.76 0.106035
Target:  5'- cCGCccACCGGGCAGAUCGCCGaggacaUCGCCc- -3'
miRNA:   3'- -GCG--UGGCUCGUCUGGCGGC------AGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 16699 0.78 0.077124
Target:  5'- gGCACCGAGguGACCGCCGagcaggUCGCg-- -3'
miRNA:   3'- gCGUGGCUCguCUGGCGGC------AGCGgcc -5'
23233 5' -61.6 NC_005259.1 + 17314 0.68 0.370938
Target:  5'- -aCGCCGAGCGGuACC-CCGagggugUGCCGGu -3'
miRNA:   3'- gcGUGGCUCGUC-UGGcGGCa-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 17731 0.79 0.070035
Target:  5'- aCGCACCGuggcuGCucgacgcgauccgugAGGCCGCCGcgCGCCGGg -3'
miRNA:   3'- -GCGUGGCu----CG---------------UCUGGCGGCa-GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 17783 0.72 0.211527
Target:  5'- gCGCACCGAGCGugcgcACCGCgauagCGagGCCGGu -3'
miRNA:   3'- -GCGUGGCUCGUc----UGGCG-----GCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 19230 0.66 0.480346
Target:  5'- gGaCACCGAGUcggcgaugaucgauGGCCGCC--UGCCGGg -3'
miRNA:   3'- gC-GUGGCUCGu-------------CUGGCGGcaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 19693 0.67 0.412136
Target:  5'- gGgAUCGAGCAGGCuCGCaCGUuggcugcCGCCGa -3'
miRNA:   3'- gCgUGGCUCGUCUG-GCG-GCA-------GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 19868 0.68 0.379115
Target:  5'- uCGCGCCc-GCcgGGAUCGCCGaCGCCGc -3'
miRNA:   3'- -GCGUGGcuCG--UCUGGCGGCaGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.