miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 47471 0.66 0.476566
Target:  5'- aGcCACCGAGguGAUCGC-GUCaCCGa -3'
miRNA:   3'- gC-GUGGCUCguCUGGCGgCAGcGGCc -5'
23233 5' -61.6 NC_005259.1 + 62006 0.66 0.486043
Target:  5'- gGCACCGuGCGGuguacCCGCuCG-CGCUGu -3'
miRNA:   3'- gCGUGGCuCGUCu----GGCG-GCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 53722 0.66 0.505259
Target:  5'- cCGCGCC--GCuGAUgGUgaUGUCGCCGGg -3'
miRNA:   3'- -GCGUGGcuCGuCUGgCG--GCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 38160 0.66 0.505259
Target:  5'- uCGCGCCGAugacGguGAUCGgugccUCGUCGCUGu -3'
miRNA:   3'- -GCGUGGCU----CguCUGGC-----GGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 64409 0.66 0.505259
Target:  5'- aGCugCGAuGCagccgugagGGAUCGCCGacgagcUGCCGGg -3'
miRNA:   3'- gCGugGCU-CG---------UCUGGCGGCa-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 36011 0.66 0.514989
Target:  5'- uGCACCGAGguGGCCaG-CGagGUCGa -3'
miRNA:   3'- gCGUGGCUCguCUGG-CgGCagCGGCc -5'
23233 5' -61.6 NC_005259.1 + 46523 0.66 0.514989
Target:  5'- cCGCgaGCCGGucGgGGAUCGCCGagaucuggUCGCCGa -3'
miRNA:   3'- -GCG--UGGCU--CgUCUGGCGGC--------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 44461 0.66 0.514989
Target:  5'- --gACCGGGgAuGCCGCCGcccUgGCCGGg -3'
miRNA:   3'- gcgUGGCUCgUcUGGCGGC---AgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 46586 0.67 0.448704
Target:  5'- cCGCGCCgcccgaggcGAGCAG-CgCGUCGUUGgCGGu -3'
miRNA:   3'- -GCGUGG---------CUCGUCuG-GCGGCAGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 3094 0.67 0.413006
Target:  5'- cCGCGCagcgauGAGCGGGCgGCCaUUGCgCGGc -3'
miRNA:   3'- -GCGUGg-----CUCGUCUGgCGGcAGCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 40002 0.67 0.448704
Target:  5'- uCGcCGCCGAGCAugagggucuGACCgggacgugauGCUuugagGUCGCCGGu -3'
miRNA:   3'- -GC-GUGGCUCGU---------CUGG----------CGG-----CAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 16459 0.67 0.413006
Target:  5'- gGCAUCGGuaccccgccGCAGAUCGCCGUCaa-GGg -3'
miRNA:   3'- gCGUGGCU---------CGUCUGGCGGCAGcggCC- -5'
23233 5' -61.6 NC_005259.1 + 8954 0.67 0.413006
Target:  5'- gCGCGCCGuGGaCGGGCa-CCGU-GCCGGg -3'
miRNA:   3'- -GCGUGGC-UC-GUCUGgcGGCAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 27178 0.67 0.439618
Target:  5'- gGCGauGAGCAGGCUGC-GaCGCUGGa -3'
miRNA:   3'- gCGUggCUCGUCUGGCGgCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 27276 0.67 0.439618
Target:  5'- aCGcCGCCuuGAGCc-GCCGCUGcacgCGCCGGa -3'
miRNA:   3'- -GC-GUGG--CUCGucUGGCGGCa---GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 19693 0.67 0.412136
Target:  5'- gGgAUCGAGCAGGCuCGCaCGUuggcugcCGCCGa -3'
miRNA:   3'- gCgUGGCUCGUCUG-GCG-GCA-------GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 3270 0.67 0.448704
Target:  5'- uGC-UCGGGUGGuuucccgucGCCGCC-UCGCCGGu -3'
miRNA:   3'- gCGuGGCUCGUC---------UGGCGGcAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 58427 0.67 0.439618
Target:  5'- -cCACCGGGCAGAUugCGCUGaUCGgUGGc -3'
miRNA:   3'- gcGUGGCUCGUCUG--GCGGC-AGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 40561 0.67 0.439618
Target:  5'- gCGCGcCCGcGCGGugUuGCUGUCGgCGGc -3'
miRNA:   3'- -GCGU-GGCuCGUCugG-CGGCAGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 3990 0.67 0.448704
Target:  5'- aGCACgCGAugGCGGGCCGC-GUCccCCGGu -3'
miRNA:   3'- gCGUG-GCU--CGUCUGGCGgCAGc-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.