miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 36864 0.66 0.495609
Target:  5'- uGCGCCGuuGCuGGcACCGCCcG-CGCCGa -3'
miRNA:   3'- gCGUGGCu-CG-UC-UGGCGG-CaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 42815 0.66 0.495609
Target:  5'- uGCACUGuGGUAuuGCUGCCGcCGCCGa -3'
miRNA:   3'- gCGUGGC-UCGUc-UGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 2146 0.66 0.495609
Target:  5'- cCGCACgGugcuggccAGCGGcgucgaGCCGCCGgUUGCCGa -3'
miRNA:   3'- -GCGUGgC--------UCGUC------UGGCGGC-AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 5072 0.66 0.467181
Target:  5'- uGgGCCGGGUcgacGGGCCGgUGUCaCCGGc -3'
miRNA:   3'- gCgUGGCUCG----UCUGGCgGCAGcGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6353 0.66 0.486043
Target:  5'- gGUGCCGuacguGCGca-CGuuGUCGCCGGg -3'
miRNA:   3'- gCGUGGCu----CGUcugGCggCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6108 0.66 0.467181
Target:  5'- -uCGCCGAgGCcgAGGCCGCCGcuaCGCgGGc -3'
miRNA:   3'- gcGUGGCU-CG--UCUGGCGGCa--GCGgCC- -5'
23233 5' -61.6 NC_005259.1 + 43656 0.66 0.505259
Target:  5'- uGCGCCGAcGguGucguuGCCGaucacaCCGcCGCCGGu -3'
miRNA:   3'- gCGUGGCU-CguC-----UGGC------GGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 30767 0.66 0.495609
Target:  5'- cCGaCGCCGguGGCAccGCUGCCGUuguucgcguacCGCCGGa -3'
miRNA:   3'- -GC-GUGGC--UCGUc-UGGCGGCA-----------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 36134 0.66 0.486043
Target:  5'- uGgGCCGc-CGGGCUGuCCGUCGCCa- -3'
miRNA:   3'- gCgUGGCucGUCUGGC-GGCAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 58576 0.66 0.467181
Target:  5'- cCGgAUCGcGGCGcGGCUGCCGg-GCCGGa -3'
miRNA:   3'- -GCgUGGC-UCGU-CUGGCGGCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 59286 0.66 0.467181
Target:  5'- aGCGgUGuGCAGACCuacGCUGUCGUggCGGc -3'
miRNA:   3'- gCGUgGCuCGUCUGG---CGGCAGCG--GCC- -5'
23233 5' -61.6 NC_005259.1 + 30967 0.66 0.491772
Target:  5'- -aCACCGAugguguaGCAGAuucccucguuguccCCGCCGUgggGCCGGa -3'
miRNA:   3'- gcGUGGCU-------CGUCU--------------GGCGGCAg--CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 9711 0.66 0.476566
Target:  5'- gGCACCGuccuCGGGCCgGUCGagcUCGCCGa -3'
miRNA:   3'- gCGUGGCuc--GUCUGG-CGGC---AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 10084 0.66 0.495609
Target:  5'- aCGCcgaCGAGUAGACC-CCGagGCCa- -3'
miRNA:   3'- -GCGug-GCUCGUCUGGcGGCagCGGcc -5'
23233 5' -61.6 NC_005259.1 + 47471 0.66 0.476566
Target:  5'- aGcCACCGAGguGAUCGC-GUCaCCGa -3'
miRNA:   3'- gC-GUGGCUCguCUGGCGgCAGcGGCc -5'
23233 5' -61.6 NC_005259.1 + 64131 0.66 0.467181
Target:  5'- cCGCcugACCGAGCGGcCCGUCGgcgaUGCCc- -3'
miRNA:   3'- -GCG---UGGCUCGUCuGGCGGCa---GCGGcc -5'
23233 5' -61.6 NC_005259.1 + 46523 0.66 0.514989
Target:  5'- cCGCgaGCCGGucGgGGAUCGCCGagaucuggUCGCCGa -3'
miRNA:   3'- -GCG--UGGCU--CgUCUGGCGGC--------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 14558 0.66 0.495609
Target:  5'- gGCagGCCGAGCggGGACCGgCGaacaccaucgCGCUGGc -3'
miRNA:   3'- gCG--UGGCUCG--UCUGGCgGCa---------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 19230 0.66 0.480346
Target:  5'- gGaCACCGAGUcggcgaugaucgauGGCCGCC--UGCCGGg -3'
miRNA:   3'- gC-GUGGCUCGu-------------CUGGCGGcaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 62006 0.66 0.486043
Target:  5'- gGCACCGuGCGGuguacCCGCuCG-CGCUGu -3'
miRNA:   3'- gCGUGGCuCGUCu----GGCG-GCaGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.