miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 775 0.68 0.387411
Target:  5'- cCGCGCCGAgGCGG-CUGCCcUCgGuuGGg -3'
miRNA:   3'- -GCGUGGCU-CGUCuGGCGGcAG-CggCC- -5'
23233 5' -61.6 NC_005259.1 + 1873 0.72 0.227679
Target:  5'- cCGCGuuCCGuaAGCAGGCCGCCGagaUCGCgCGa -3'
miRNA:   3'- -GCGU--GGC--UCGUCUGGCGGC---AGCG-GCc -5'
23233 5' -61.6 NC_005259.1 + 2146 0.66 0.495609
Target:  5'- cCGCACgGugcuggccAGCGGcgucgaGCCGCCGgUUGCCGa -3'
miRNA:   3'- -GCGUGgC--------UCGUC------UGGCGGC-AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 2215 0.7 0.275876
Target:  5'- gCGCACCGAGCGccCgGCC-UCGCCa- -3'
miRNA:   3'- -GCGUGGCUCGUcuGgCGGcAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 3094 0.67 0.413006
Target:  5'- cCGCGCagcgauGAGCGGGCgGCCaUUGCgCGGc -3'
miRNA:   3'- -GCGUGg-----CUCGUCUGgCGGcAGCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 3270 0.67 0.448704
Target:  5'- uGC-UCGGGUGGuuucccgucGCCGCC-UCGCCGGu -3'
miRNA:   3'- gCGuGGCUCGUC---------UGGCGGcAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 3990 0.67 0.448704
Target:  5'- aGCACgCGAugGCGGGCCGC-GUCccCCGGu -3'
miRNA:   3'- gCGUG-GCU--CGUCUGGCGgCAGc-GGCC- -5'
23233 5' -61.6 NC_005259.1 + 5072 0.66 0.467181
Target:  5'- uGgGCCGGGUcgacGGGCCGgUGUCaCCGGc -3'
miRNA:   3'- gCgUGGCUCG----UCUGGCgGCAGcGGCC- -5'
23233 5' -61.6 NC_005259.1 + 5371 0.68 0.374195
Target:  5'- uCGCGCCGGGCaAGugcccacacaucaccACCGUCGUcaucacccgCGCUGGc -3'
miRNA:   3'- -GCGUGGCUCG-UC---------------UGGCGGCA---------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 5492 0.69 0.331891
Target:  5'- aGCGCCGAGCgaGGAUCGagcuaCGcgCGCCGc -3'
miRNA:   3'- gCGUGGCUCG--UCUGGCg----GCa-GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 6108 0.66 0.467181
Target:  5'- -uCGCCGAgGCcgAGGCCGCCGcuaCGCgGGc -3'
miRNA:   3'- gcGUGGCU-CG--UCUGGCGGCa--GCGgCC- -5'
23233 5' -61.6 NC_005259.1 + 6201 0.69 0.331891
Target:  5'- aGCAgCguGAGCGGggugaGCCGCCG-CGCCGa -3'
miRNA:   3'- gCGUgG--CUCGUC-----UGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 6353 0.66 0.486043
Target:  5'- gGUGCCGuacguGCGca-CGuuGUCGCCGGg -3'
miRNA:   3'- gCGUGGCu----CGUcugGCggCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6443 0.71 0.239018
Target:  5'- gGCACCGucgcGCuGAUCGgcagCGUCGCCGGu -3'
miRNA:   3'- gCGUGGCu---CGuCUGGCg---GCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6909 0.67 0.413006
Target:  5'- aCGCGCCGccGCcaucgAGaACCGCCGcCGCCu- -3'
miRNA:   3'- -GCGUGGCu-CG-----UC-UGGCGGCaGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 7204 0.66 0.512062
Target:  5'- aCGCACCGGGCugcgguggaucugcGugaugaacgacGGCaGCCG-CGCCGGu -3'
miRNA:   3'- -GCGUGGCUCG--------------U-----------CUGgCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 7314 0.8 0.063917
Target:  5'- uGC-CCGAGUucACCGCCGUCGCCGa -3'
miRNA:   3'- gCGuGGCUCGucUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 7569 0.69 0.339453
Target:  5'- aCGcCACCGuuCGcGCCGCCGcCGCCGa -3'
miRNA:   3'- -GC-GUGGCucGUcUGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 7641 0.81 0.046195
Target:  5'- cCGuCGCCGAGUucGACCGCCGUCGUCGu -3'
miRNA:   3'- -GC-GUGGCUCGu-CUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 8818 0.71 0.239018
Target:  5'- uCGCGCCGGGCcggugaguuGACgCGCUG-CGCCGa -3'
miRNA:   3'- -GCGUGGCUCGu--------CUG-GCGGCaGCGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.