miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 66266 0.7 0.269431
Target:  5'- cCGCGCCGGGCGG-CgGCUcaCGCCGc -3'
miRNA:   3'- -GCGUGGCUCGUCuGgCGGcaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 65986 0.72 0.211527
Target:  5'- gCGCGCCGAGCAG-CCGCuCGaCGUggugcgcacccuCGGg -3'
miRNA:   3'- -GCGUGGCUCGUCuGGCG-GCaGCG------------GCC- -5'
23233 5' -61.6 NC_005259.1 + 64409 0.66 0.505259
Target:  5'- aGCugCGAuGCagccgugagGGAUCGCCGacgagcUGCCGGg -3'
miRNA:   3'- gCGugGCU-CG---------UCUGGCGGCa-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 64131 0.66 0.467181
Target:  5'- cCGCcugACCGAGCGGcCCGUCGgcgaUGCCc- -3'
miRNA:   3'- -GCG---UGGCUCGUCuGGCGGCa---GCGGcc -5'
23233 5' -61.6 NC_005259.1 + 63153 0.69 0.324453
Target:  5'- uCGCccacGuuGAGCAG-CCGCCGcagCGCCGc -3'
miRNA:   3'- -GCG----UggCUCGUCuGGCGGCa--GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 62006 0.66 0.486043
Target:  5'- gGCACCGuGCGGuguacCCGCuCG-CGCUGu -3'
miRNA:   3'- gCGUGGCuCGUCu----GGCG-GCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 61235 0.69 0.33793
Target:  5'- gCGCACCGAGaacucgaucucgGGugCGagcaugcgaCCGUCGCUGGu -3'
miRNA:   3'- -GCGUGGCUCg-----------UCugGC---------GGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 61066 0.7 0.282444
Target:  5'- uGUGCCGGGCAucGGCauaGgCGUCGUCGGc -3'
miRNA:   3'- gCGUGGCUCGU--CUGg--CgGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 60503 0.73 0.172781
Target:  5'- aCGCGCCGGuguugucGUAGugCGCCaUgGCCGGg -3'
miRNA:   3'- -GCGUGGCU-------CGUCugGCGGcAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 60278 0.73 0.182173
Target:  5'- gCGCuGCCGGGCGG-CCaUCGUCGUCGGu -3'
miRNA:   3'- -GCG-UGGCUCGUCuGGcGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 59397 0.67 0.430638
Target:  5'- cCGCGCgCGAGCGuGACCucgcgcauGgCGUCGgCGGc -3'
miRNA:   3'- -GCGUG-GCUCGU-CUGG--------CgGCAGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 59286 0.66 0.467181
Target:  5'- aGCGgUGuGCAGACCuacGCUGUCGUggCGGc -3'
miRNA:   3'- gCGUgGCuCGUCUGG---CGGCAGCG--GCC- -5'
23233 5' -61.6 NC_005259.1 + 59124 0.75 0.136209
Target:  5'- gGCAUCGAGCAGAgCGUCGagcucggcagcggUGCCGGg -3'
miRNA:   3'- gCGUGGCUCGUCUgGCGGCa------------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 58771 0.69 0.339453
Target:  5'- aCGCugCGGGCGcuGugCGCCgGUCGaggCGGu -3'
miRNA:   3'- -GCGugGCUCGU--CugGCGG-CAGCg--GCC- -5'
23233 5' -61.6 NC_005259.1 + 58669 0.71 0.237863
Target:  5'- uGCACCGGggugcagcuuccaucGCGGggucggcucgucgccGCCGCCGucaccaUCGCCGGg -3'
miRNA:   3'- gCGUGGCU---------------CGUC---------------UGGCGGC------AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 58576 0.66 0.467181
Target:  5'- cCGgAUCGcGGCGcGGCUGCCGg-GCCGGa -3'
miRNA:   3'- -GCgUGGC-UCGU-CUGGCGGCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 58427 0.67 0.439618
Target:  5'- -cCACCGGGCAGAUugCGCUGaUCGgUGGc -3'
miRNA:   3'- gcGUGGCUCGUCUG--GCGGC-AGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 58169 0.68 0.4035
Target:  5'- gCGCACgggaucuCGAcGCAcgucuuGACCGCCGUgggcuUGCCGGu -3'
miRNA:   3'- -GCGUG-------GCU-CGU------CUGGCGGCA-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 57947 0.71 0.256906
Target:  5'- aGCACCGAgGCcauGGCCcCCauggucgagGUCGCCGGg -3'
miRNA:   3'- gCGUGGCU-CGu--CUGGcGG---------CAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 57461 0.67 0.448704
Target:  5'- aCGCugCG-GCAGGCCGgUGgCaCCGGa -3'
miRNA:   3'- -GCGugGCuCGUCUGGCgGCaGcGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.