miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 46523 0.66 0.514989
Target:  5'- cCGCgaGCCGGucGgGGAUCGCCGagaucuggUCGCCGa -3'
miRNA:   3'- -GCG--UGGCU--CgUCUGGCGGC--------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 59124 0.75 0.136209
Target:  5'- gGCAUCGAGCAGAgCGUCGagcucggcagcggUGCCGGg -3'
miRNA:   3'- gCGUGGCUCGUCUgGCGGCa------------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 56293 0.74 0.148672
Target:  5'- gGCACC-AGCAGACCa-CGUgGCCGGa -3'
miRNA:   3'- gCGUGGcUCGUCUGGcgGCAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 14334 0.74 0.148672
Target:  5'- cCGC-CCGcguGCGGGCCGCCGaCGCCa- -3'
miRNA:   3'- -GCGuGGCu--CGUCUGGCGGCaGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 45630 0.74 0.160523
Target:  5'- cCGgGCCGGGCAGcgcgccgguGCCGCCGUgaacacCGCCGu -3'
miRNA:   3'- -GCgUGGCUCGUC---------UGGCGGCA------GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 45401 0.74 0.168463
Target:  5'- uCGcCGCCGAGCGcgcugauGGCCGCCGcCGCUGc -3'
miRNA:   3'- -GC-GUGGCUCGU-------CUGGCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 22674 0.74 0.16889
Target:  5'- aCGCACUGAccgccGCcGAuuuccCCGCCGUCGCCGu -3'
miRNA:   3'- -GCGUGGCU-----CGuCU-----GGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 26067 0.74 0.16889
Target:  5'- cCGcCGCCGAGCAGuCCcccgagGCCGcCGCCGa -3'
miRNA:   3'- -GC-GUGGCUCGUCuGG------CGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 60503 0.73 0.172781
Target:  5'- aCGCGCCGGuguugucGUAGugCGCCaUgGCCGGg -3'
miRNA:   3'- -GCGUGGCU-------CGUCugGCGGcAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 53252 0.75 0.124065
Target:  5'- cCGaCACCGucGCc-GCCGCUGUCGCCGGu -3'
miRNA:   3'- -GC-GUGGCu-CGucUGGCGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 45541 0.75 0.124065
Target:  5'- gGCugCGAGCGGGuuGC--UCGCCGGg -3'
miRNA:   3'- gCGugGCUCGUCUggCGgcAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 11006 0.76 0.117759
Target:  5'- gGCACCGcGcCGGACgCGCCGaggcaggaguUCGCCGGg -3'
miRNA:   3'- gCGUGGCuC-GUCUG-GCGGC----------AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 26108 0.87 0.01819
Target:  5'- ---cCCGAGCAGACCGCCGcCGCCGGu -3'
miRNA:   3'- gcguGGCUCGUCUGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 7641 0.81 0.046195
Target:  5'- cCGuCGCCGAGUucGACCGCCGUCGUCGu -3'
miRNA:   3'- -GC-GUGGCUCGu-CUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 35520 0.8 0.05738
Target:  5'- cCGcCGCCGGGCAcaccGcCCGCCGUCGCCGa -3'
miRNA:   3'- -GC-GUGGCUCGU----CuGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 7314 0.8 0.063917
Target:  5'- uGC-CCGAGUucACCGCCGUCGCCGa -3'
miRNA:   3'- gCGuGGCUCGucUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 17731 0.79 0.070035
Target:  5'- aCGCACCGuggcuGCucgacgcgauccgugAGGCCGCCGcgCGCCGGg -3'
miRNA:   3'- -GCGUGGCu----CG---------------UCUGGCGGCa-GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 16699 0.78 0.077124
Target:  5'- gGCACCGAGguGACCGCCGagcaggUCGCg-- -3'
miRNA:   3'- gCGUGGCUCguCUGGCGGC------AGCGgcc -5'
23233 5' -61.6 NC_005259.1 + 43031 0.77 0.100593
Target:  5'- uGcCGCCGAGCAGGCCGCCGagcagCGaaccgaCGGg -3'
miRNA:   3'- gC-GUGGCUCGUCUGGCGGCa----GCg-----GCC- -5'
23233 5' -61.6 NC_005259.1 + 16567 0.76 0.106035
Target:  5'- cCGCccACCGGGCAGAUCGCCGaggacaUCGCCc- -3'
miRNA:   3'- -GCG--UGGCUCGUCUGGCGGC------AGCGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.