miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 15531 0.73 0.173218
Target:  5'- aGCACU---CAGGCCGCCGUCacugGCCGGu -3'
miRNA:   3'- gCGUGGcucGUCUGGCGGCAG----CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 46904 0.73 0.177645
Target:  5'- gCGCccGCCGAGCAGuCCGCgugCGcCGCCGa -3'
miRNA:   3'- -GCG--UGGCUCGUCuGGCG---GCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 60278 0.73 0.182173
Target:  5'- gCGCuGCCGGGCGG-CCaUCGUCGUCGGu -3'
miRNA:   3'- -GCG-UGGCUCGUCuGGcGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 20245 0.73 0.191534
Target:  5'- cCGCACCcuguGC-GACaCGCCG-CGCCGGg -3'
miRNA:   3'- -GCGUGGcu--CGuCUG-GCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 65986 0.72 0.211527
Target:  5'- gCGCGCCGAGCAG-CCGCuCGaCGUggugcgcacccuCGGg -3'
miRNA:   3'- -GCGUGGCUCGUCuGGCG-GCaGCG------------GCC- -5'
23233 5' -61.6 NC_005259.1 + 42943 0.72 0.211527
Target:  5'- -uCGCCGugGGCgAGGCCGCCGUUGUCGa -3'
miRNA:   3'- gcGUGGC--UCG-UCUGGCGGCAGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 17783 0.72 0.211527
Target:  5'- gCGCACCGAGCGugcgcACCGCgauagCGagGCCGGu -3'
miRNA:   3'- -GCGUGGCUCGUc----UGGCG-----GCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 1873 0.72 0.227679
Target:  5'- cCGCGuuCCGuaAGCAGGCCGCCGagaUCGCgCGa -3'
miRNA:   3'- -GCGU--GGC--UCGUCUGGCGGC---AGCG-GCc -5'
23233 5' -61.6 NC_005259.1 + 24115 0.72 0.227679
Target:  5'- gGgACCGGGCGGggacuacaccGCCGCCGcccugcUCGCCGa -3'
miRNA:   3'- gCgUGGCUCGUC----------UGGCGGC------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 43823 0.72 0.227679
Target:  5'- gCGUACCGccGGacacaGGGCCGCCGcUCGCCa- -3'
miRNA:   3'- -GCGUGGC--UCg----UCUGGCGGC-AGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 43873 0.71 0.23329
Target:  5'- aCGaCACCG-GCAGcguuGCCGCCGacauugcccgCGCCGGc -3'
miRNA:   3'- -GC-GUGGCuCGUC----UGGCGGCa---------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 58669 0.71 0.237863
Target:  5'- uGCACCGGggugcagcuuccaucGCGGggucggcucgucgccGCCGCCGucaccaUCGCCGGg -3'
miRNA:   3'- gCGUGGCU---------------CGUC---------------UGGCGGC------AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6443 0.71 0.239018
Target:  5'- gGCACCGucgcGCuGAUCGgcagCGUCGCCGGu -3'
miRNA:   3'- gCGUGGCu---CGuCUGGCg---GCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 55902 0.71 0.239018
Target:  5'- uCGCGCCGGGgucgcuggcCAGACCGCUGgucUGCuCGGc -3'
miRNA:   3'- -GCGUGGCUC---------GUCUGGCGGCa--GCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 8818 0.71 0.239018
Target:  5'- uCGCGCCGGGCcggugaguuGACgCGCUG-CGCCGa -3'
miRNA:   3'- -GCGUGGCUCGu--------CUG-GCGGCaGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 38736 0.71 0.239018
Target:  5'- cCGUACCG-GCGGuggcCCGCCGcagGCCGGu -3'
miRNA:   3'- -GCGUGGCuCGUCu---GGCGGCag-CGGCC- -5'
23233 5' -61.6 NC_005259.1 + 43719 0.71 0.250223
Target:  5'- cCGCAUCGAgucgaugGCGGccauGCCGCCGa-GCCGGg -3'
miRNA:   3'- -GCGUGGCU-------CGUC----UGGCGGCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 12213 0.71 0.250825
Target:  5'- uGCACCG-GCGcACCGCCcgcUgGCCGGg -3'
miRNA:   3'- gCGUGGCuCGUcUGGCGGc--AgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 13440 0.71 0.250825
Target:  5'- cCGCGCUaGGCGuGACCGUCGgcgcggCGCUGGu -3'
miRNA:   3'- -GCGUGGcUCGU-CUGGCGGCa-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 37184 0.71 0.255069
Target:  5'- gCGCGaggaCGAGCugcGGcccuugccgccaccGCCGCCGcCGCCGGg -3'
miRNA:   3'- -GCGUg---GCUCG---UC--------------UGGCGGCaGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.