miRNA display CGI


Results 21 - 40 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 19230 0.66 0.480346
Target:  5'- gGaCACCGAGUcggcgaugaucgauGGCCGCC--UGCCGGg -3'
miRNA:   3'- gC-GUGGCUCGu-------------CUGGCGGcaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 9711 0.66 0.476566
Target:  5'- gGCACCGuccuCGGGCCgGUCGagcUCGCCGa -3'
miRNA:   3'- gCGUGGCuc--GUCUGG-CGGC---AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 47471 0.66 0.476566
Target:  5'- aGcCACCGAGguGAUCGC-GUCaCCGa -3'
miRNA:   3'- gC-GUGGCUCguCUGGCGgCAGcGGCc -5'
23233 5' -61.6 NC_005259.1 + 64131 0.66 0.467181
Target:  5'- cCGCcugACCGAGCGGcCCGUCGgcgaUGCCc- -3'
miRNA:   3'- -GCG---UGGCUCGUCuGGCGGCa---GCGGcc -5'
23233 5' -61.6 NC_005259.1 + 58576 0.66 0.467181
Target:  5'- cCGgAUCGcGGCGcGGCUGCCGg-GCCGGa -3'
miRNA:   3'- -GCgUGGC-UCGU-CUGGCGGCagCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 59286 0.66 0.467181
Target:  5'- aGCGgUGuGCAGACCuacGCUGUCGUggCGGc -3'
miRNA:   3'- gCGUgGCuCGUCUGG---CGGCAGCG--GCC- -5'
23233 5' -61.6 NC_005259.1 + 5072 0.66 0.467181
Target:  5'- uGgGCCGGGUcgacGGGCCGgUGUCaCCGGc -3'
miRNA:   3'- gCgUGGCUCG----UCUGGCgGCAGcGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6108 0.66 0.467181
Target:  5'- -uCGCCGAgGCcgAGGCCGCCGcuaCGCgGGc -3'
miRNA:   3'- gcGUGGCU-CG--UCUGGCGGCa--GCGgCC- -5'
23233 5' -61.6 NC_005259.1 + 35257 0.67 0.457893
Target:  5'- uCGCGuuGuucGC-GcCCGCCG-CGCCGGg -3'
miRNA:   3'- -GCGUggCu--CGuCuGGCGGCaGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 20454 0.67 0.457893
Target:  5'- aCGaGCCGGGguGgcucggaugACCGCCGUCGaCCu- -3'
miRNA:   3'- -GCgUGGCUCguC---------UGGCGGCAGC-GGcc -5'
23233 5' -61.6 NC_005259.1 + 45344 0.67 0.457893
Target:  5'- uGCGCCGccUGGGCCGCCGcguagUCGaCGGg -3'
miRNA:   3'- gCGUGGCucGUCUGGCGGC-----AGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 23895 0.67 0.457893
Target:  5'- cCGC-CCGAGCcgccgcGcCCGCCGUCGaaauacaaCGGu -3'
miRNA:   3'- -GCGuGGCUCGu-----CuGGCGGCAGCg-------GCC- -5'
23233 5' -61.6 NC_005259.1 + 3990 0.67 0.448704
Target:  5'- aGCACgCGAugGCGGGCCGC-GUCccCCGGu -3'
miRNA:   3'- gCGUG-GCU--CGUCUGGCGgCAGc-GGCC- -5'
23233 5' -61.6 NC_005259.1 + 40002 0.67 0.448704
Target:  5'- uCGcCGCCGAGCAugagggucuGACCgggacgugauGCUuugagGUCGCCGGu -3'
miRNA:   3'- -GC-GUGGCUCGU---------CUGG----------CGG-----CAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 3270 0.67 0.448704
Target:  5'- uGC-UCGGGUGGuuucccgucGCCGCC-UCGCCGGu -3'
miRNA:   3'- gCGuGGCUCGUC---------UGGCGGcAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 46586 0.67 0.448704
Target:  5'- cCGCGCCgcccgaggcGAGCAG-CgCGUCGUUGgCGGu -3'
miRNA:   3'- -GCGUGG---------CUCGUCuG-GCGGCAGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 57461 0.67 0.448704
Target:  5'- aCGCugCG-GCAGGCCGgUGgCaCCGGa -3'
miRNA:   3'- -GCGugGCuCGUCUGGCgGCaGcGGCC- -5'
23233 5' -61.6 NC_005259.1 + 58427 0.67 0.439618
Target:  5'- -cCACCGGGCAGAUugCGCUGaUCGgUGGc -3'
miRNA:   3'- gcGUGGCUCGUCUG--GCGGC-AGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 27276 0.67 0.439618
Target:  5'- aCGcCGCCuuGAGCc-GCCGCUGcacgCGCCGGa -3'
miRNA:   3'- -GC-GUGG--CUCGucUGGCGGCa---GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 40561 0.67 0.439618
Target:  5'- gCGCGcCCGcGCGGugUuGCUGUCGgCGGc -3'
miRNA:   3'- -GCGU-GGCuCGUCugG-CGGCAGCgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.