miRNA display CGI


Results 41 - 60 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23233 5' -61.6 NC_005259.1 + 27276 0.67 0.439618
Target:  5'- aCGcCGCCuuGAGCc-GCCGCUGcacgCGCCGGa -3'
miRNA:   3'- -GC-GUGG--CUCGucUGGCGGCa---GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 25913 0.67 0.434217
Target:  5'- cCGC-CUGAGCcgccGCCGCCGguccggugagcgcaCGCCGGu -3'
miRNA:   3'- -GCGuGGCUCGuc--UGGCGGCa-------------GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 41504 0.67 0.430638
Target:  5'- gGUGgCGGGCAGACCGUgGaUCuGCaCGGg -3'
miRNA:   3'- gCGUgGCUCGUCUGGCGgC-AG-CG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 59397 0.67 0.430638
Target:  5'- cCGCGCgCGAGCGuGACCucgcgcauGgCGUCGgCGGc -3'
miRNA:   3'- -GCGUG-GCUCGU-CUGG--------CgGCAGCgGCC- -5'
23233 5' -61.6 NC_005259.1 + 55426 0.67 0.421767
Target:  5'- aGCACCGAGCcGACgaCGCCGacgaacgCGUacaGGg -3'
miRNA:   3'- gCGUGGCUCGuCUG--GCGGCa------GCGg--CC- -5'
23233 5' -61.6 NC_005259.1 + 22754 0.67 0.421767
Target:  5'- gCGUACCGAaaCGGcACCGCCaaggCGCUGGu -3'
miRNA:   3'- -GCGUGGCUc-GUC-UGGCGGca--GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 44766 0.67 0.421767
Target:  5'- aGCACCGAucccGCAucGGCgGUCGagaacagacgcUCGCCGGu -3'
miRNA:   3'- gCGUGGCU----CGU--CUGgCGGC-----------AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 24834 0.67 0.421767
Target:  5'- cCGCACCGAccaaGCAGuCCGUgCGcuaCGCCGa -3'
miRNA:   3'- -GCGUGGCU----CGUCuGGCG-GCa--GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 27208 0.67 0.421767
Target:  5'- cCGCACCgcgagcucgguGAGCGGGCCGaaaUCGCCa- -3'
miRNA:   3'- -GCGUGG-----------CUCGUCUGGCggcAGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 8954 0.67 0.413006
Target:  5'- gCGCGCCGuGGaCGGGCa-CCGU-GCCGGg -3'
miRNA:   3'- -GCGUGGC-UC-GUCUGgcGGCAgCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 6909 0.67 0.413006
Target:  5'- aCGCGCCGccGCcaucgAGaACCGCCGcCGCCu- -3'
miRNA:   3'- -GCGUGGCu-CG-----UC-UGGCGGCaGCGGcc -5'
23233 5' -61.6 NC_005259.1 + 16459 0.67 0.413006
Target:  5'- gGCAUCGGuaccccgccGCAGAUCGCCGUCaa-GGg -3'
miRNA:   3'- gCGUGGCU---------CGUCUGGCGGCAGcggCC- -5'
23233 5' -61.6 NC_005259.1 + 3094 0.67 0.413006
Target:  5'- cCGCGCagcgauGAGCGGGCgGCCaUUGCgCGGc -3'
miRNA:   3'- -GCGUGg-----CUCGUCUGgCGGcAGCG-GCC- -5'
23233 5' -61.6 NC_005259.1 + 19693 0.67 0.412136
Target:  5'- gGgAUCGAGCAGGCuCGCaCGUuggcugcCGCCGa -3'
miRNA:   3'- gCgUGGCUCGUCUG-GCG-GCA-------GCGGCc -5'
23233 5' -61.6 NC_005259.1 + 52110 0.68 0.404359
Target:  5'- gGCAacCUGAGCGGcaaucuccgcACCGCCGuccggcaccUCGCCGa -3'
miRNA:   3'- gCGU--GGCUCGUC----------UGGCGGC---------AGCGGCc -5'
23233 5' -61.6 NC_005259.1 + 41877 0.68 0.404359
Target:  5'- aGCACCGuGGCGGGCCGauaCGcaUGCgGGa -3'
miRNA:   3'- gCGUGGC-UCGUCUGGCg--GCa-GCGgCC- -5'
23233 5' -61.6 NC_005259.1 + 48523 0.68 0.4035
Target:  5'- cCGCACU--GCcGACuucucggCGCUGUCGCCGGu -3'
miRNA:   3'- -GCGUGGcuCGuCUG-------GCGGCAGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 58169 0.68 0.4035
Target:  5'- gCGCACgggaucuCGAcGCAcgucuuGACCGCCGUgggcuUGCCGGu -3'
miRNA:   3'- -GCGUG-------GCU-CGU------CUGGCGGCA-----GCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 56068 0.68 0.395827
Target:  5'- gGCGucgagaccgUCGAGCAGAUCGgUGcUCGUCGGg -3'
miRNA:   3'- gCGU---------GGCUCGUCUGGCgGC-AGCGGCC- -5'
23233 5' -61.6 NC_005259.1 + 55562 0.68 0.39498
Target:  5'- uGCcgaaAgCGAGCAGgaacaucACCGCCG-CGCUGGc -3'
miRNA:   3'- gCG----UgGCUCGUC-------UGGCGGCaGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.