miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 3' -62.7 NC_005259.1 + 1376 0.66 0.42791
Target:  5'- -cGCGCCGCCCgcgaGGCCCgCGcaugagccUCUCAUa- -3'
miRNA:   3'- acCGUGGCGGG----CCGGG-GU--------AGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 36874 0.72 0.174464
Target:  5'- cUGGCACCGCCCGcGCCgacgacgCCGgugaGCGCc -3'
miRNA:   3'- -ACCGUGGCGGGC-CGG-------GGUagagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 9546 0.72 0.174909
Target:  5'- cGGagaGCUGCCCGGCCUCGaC-CGCGUc -3'
miRNA:   3'- aCCg--UGGCGGGCCGGGGUaGaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 6460 0.71 0.188724
Target:  5'- cGGCAgcgUCGCCgGuGCCCUGUacccgCUCACGCg -3'
miRNA:   3'- aCCGU---GGCGGgC-CGGGGUA-----GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 49669 0.7 0.213353
Target:  5'- -cGCGCCuGCUCGGCCUgGUagucggcCUCGCGCu -3'
miRNA:   3'- acCGUGG-CGGGCCGGGgUA-------GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 46306 0.7 0.213884
Target:  5'- gUGGCugCGUUguucgCGGCCCCgaggGUCgcgUCGCGCa -3'
miRNA:   3'- -ACCGugGCGG-----GCCGGGG----UAG---AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 42223 0.7 0.218707
Target:  5'- -cGCGCCGCcguccCCGGCCaucucgaCCAcCUCGCGCu -3'
miRNA:   3'- acCGUGGCG-----GGCCGG-------GGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 10885 0.7 0.219249
Target:  5'- aUGaGCAgCaCCCGGCCCCGUCguuccucgaugCugGCu -3'
miRNA:   3'- -AC-CGUgGcGGGCCGGGGUAGa----------GugCG- -5'
23235 3' -62.7 NC_005259.1 + 55586 0.7 0.219249
Target:  5'- --cCGCCGCgCUGGCCacgcgauaccaCGUCUCGCGCg -3'
miRNA:   3'- accGUGGCG-GGCCGGg----------GUAGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 4367 0.72 0.157893
Target:  5'- cGGCA-CGCCCGuGCCCUG-CUCAuCGCc -3'
miRNA:   3'- aCCGUgGCGGGC-CGGGGUaGAGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 28142 0.73 0.146128
Target:  5'- aGGCgaugaGCUGCCCGGCCUCGa--CGCGCu -3'
miRNA:   3'- aCCG-----UGGCGGGCCGGGGUagaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 36467 0.73 0.142387
Target:  5'- gUGaGCACCGCCCaccaCCCgAUCUCGCGg -3'
miRNA:   3'- -AC-CGUGGCGGGcc--GGGgUAGAGUGCg -5'
23235 3' -62.7 NC_005259.1 + 35740 0.89 0.008739
Target:  5'- cGGCGCUGCCCGGCCCCAcgUUCAUGUa -3'
miRNA:   3'- aCCGUGGCGGGCCGGGGUa-GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 13011 0.85 0.017546
Target:  5'- cGGCuacgccGCCGCCCGGCCCCAg--CACGCc -3'
miRNA:   3'- aCCG------UGGCGGGCCGGGGUagaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 62005 0.78 0.064047
Target:  5'- gGGCACCGUgCGGUguaCCCG-CUCGCGCu -3'
miRNA:   3'- aCCGUGGCGgGCCG---GGGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 52246 0.77 0.077397
Target:  5'- --cUACCGCCCGGCCCC-UCUCAgGg -3'
miRNA:   3'- accGUGGCGGGCCGGGGuAGAGUgCg -5'
23235 3' -62.7 NC_005259.1 + 44516 0.75 0.095915
Target:  5'- cUGGCcacccacgccGCCGCCCGGCaguCCA-CUCAUGCc -3'
miRNA:   3'- -ACCG----------UGGCGGGCCGg--GGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 56262 0.74 0.118569
Target:  5'- cGGCcuugagcgccGCCGCCCGGCCCgUAUCggCACcaGCa -3'
miRNA:   3'- aCCG----------UGGCGGGCCGGG-GUAGa-GUG--CG- -5'
23235 3' -62.7 NC_005259.1 + 9777 0.74 0.128286
Target:  5'- cUGGCucgacuuCUGCCCGGUgugCCCG-CUCGCGCc -3'
miRNA:   3'- -ACCGu------GGCGGGCCG---GGGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 68278 0.74 0.128286
Target:  5'- aGGCACCGUCCucGCCCCAUacaUCgggaucggGCGCg -3'
miRNA:   3'- aCCGUGGCGGGc-CGGGGUAg--AG--------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.