miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 3' -62.7 NC_005259.1 + 1376 0.66 0.42791
Target:  5'- -cGCGCCGCCCgcgaGGCCCgCGcaugagccUCUCAUa- -3'
miRNA:   3'- acCGUGGCGGG----CCGGG-GU--------AGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 1606 0.69 0.260084
Target:  5'- gGGCACaa-UUGGCCCuCGUCUCGuCGCu -3'
miRNA:   3'- aCCGUGgcgGGCCGGG-GUAGAGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 3143 0.66 0.396373
Target:  5'- cGGCACCGCCCgugggacuacacGGUgaugCCCggcgaugucaaggucGUCggugCGCGCa -3'
miRNA:   3'- aCCGUGGCGGG------------CCG----GGG---------------UAGa---GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 4367 0.72 0.157893
Target:  5'- cGGCA-CGCCCGuGCCCUG-CUCAuCGCc -3'
miRNA:   3'- aCCGUgGCGGGC-CGGGGUaGAGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 4682 0.66 0.42791
Target:  5'- cUGGCucggGCCgacaGCUCGGCCCCGUggugcgaugaC-CGCGCc -3'
miRNA:   3'- -ACCG----UGG----CGGGCCGGGGUA----------GaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 4800 0.67 0.367998
Target:  5'- aGGUACUGCCCGaGCUgCCAgacgUUGCGCc -3'
miRNA:   3'- aCCGUGGCGGGC-CGG-GGUag--AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 6460 0.71 0.188724
Target:  5'- cGGCAgcgUCGCCgGuGCCCUGUacccgCUCACGCg -3'
miRNA:   3'- aCCGU---GGCGGgC-CGGGGUA-----GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 6495 0.69 0.270248
Target:  5'- gGGUACUG-CUGGCCCaCAUCgaccgacgccgugCGCGCg -3'
miRNA:   3'- aCCGUGGCgGGCCGGG-GUAGa------------GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 7177 0.68 0.285416
Target:  5'- gGGCACCggcgaguGCCCGGCCUg--CggACGCa -3'
miRNA:   3'- aCCGUGG-------CGGGCCGGGguaGagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 7279 0.67 0.351971
Target:  5'- cGGCuACCGCCCcGCCCCcaagCACu- -3'
miRNA:   3'- aCCG-UGGCGGGcCGGGGuagaGUGcg -5'
23235 3' -62.7 NC_005259.1 + 7429 0.66 0.419
Target:  5'- cGGCGgUGCCCGcGCCgCAUggCAgCGCc -3'
miRNA:   3'- aCCGUgGCGGGC-CGGgGUAgaGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 8009 0.68 0.292904
Target:  5'- cGGUAgcccCCGcCCCGGCggccacCCCGUUUCGCGa -3'
miRNA:   3'- aCCGU----GGC-GGGCCG------GGGUAGAGUGCg -5'
23235 3' -62.7 NC_005259.1 + 8795 0.68 0.292904
Target:  5'- cGGC-CCGCuuGGCgaggaUCuUCUCGCGCc -3'
miRNA:   3'- aCCGuGGCGggCCGg----GGuAGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 9546 0.72 0.174909
Target:  5'- cGGagaGCUGCCCGGCCUCGaC-CGCGUc -3'
miRNA:   3'- aCCg--UGGCGGGCCGGGGUaGaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 9710 0.67 0.344145
Target:  5'- gGGCACCGuCCuCGGgCCgGUCgagCuCGCc -3'
miRNA:   3'- aCCGUGGC-GG-GCCgGGgUAGa--GuGCG- -5'
23235 3' -62.7 NC_005259.1 + 9777 0.74 0.128286
Target:  5'- cUGGCucgacuuCUGCCCGGUgugCCCG-CUCGCGCc -3'
miRNA:   3'- -ACCGu------GGCGGGCCG---GGGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 10885 0.7 0.219249
Target:  5'- aUGaGCAgCaCCCGGCCCCGUCguuccucgaugCugGCu -3'
miRNA:   3'- -AC-CGUgGcGGGCCGGGGUAGa----------GugCG- -5'
23235 3' -62.7 NC_005259.1 + 11444 0.66 0.42791
Target:  5'- gGGCcgcucgcuGCCGCCgGuGCCUauCGUCUCGCa- -3'
miRNA:   3'- aCCG--------UGGCGGgC-CGGG--GUAGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 12321 0.66 0.401524
Target:  5'- gUGcGCACCGCC--GCCag--CUCACGCa -3'
miRNA:   3'- -AC-CGUGGCGGgcCGGgguaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 13011 0.85 0.017546
Target:  5'- cGGCuacgccGCCGCCCGGCCCCAg--CACGCc -3'
miRNA:   3'- aCCG------UGGCGGGCCGGGGUagaGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.