miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 3' -62.7 NC_005259.1 + 19373 0.67 0.328871
Target:  5'- aGGCcCCGCugaucaCCGGCCCCAaCggcaGCGUc -3'
miRNA:   3'- aCCGuGGCG------GGCCGGGGUaGag--UGCG- -5'
23235 3' -62.7 NC_005259.1 + 19653 0.67 0.335682
Target:  5'- cGGCACCGCCuCGGgcagccgcuacauCCCCGg-UCAgGUc -3'
miRNA:   3'- aCCGUGGCGG-GCC-------------GGGGUagAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 20490 0.66 0.392962
Target:  5'- cGaCACCGCCCGGCagCUCAUCg-GCGa -3'
miRNA:   3'- aCcGUGGCGGGCCG--GGGUAGagUGCg -5'
23235 3' -62.7 NC_005259.1 + 20694 0.69 0.246021
Target:  5'- cGGCACgCGCUCGGUggucgaagguuucaCCCcgC-CGCGCg -3'
miRNA:   3'- aCCGUG-GCGGGCCG--------------GGGuaGaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 27409 0.66 0.410205
Target:  5'- cGGCGgCaGCUCGGUgCCCGcgaggaauuggCUCACGCg -3'
miRNA:   3'- aCCGUgG-CGGGCCG-GGGUa----------GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 28142 0.73 0.146128
Target:  5'- aGGCgaugaGCUGCCCGGCCUCGa--CGCGCu -3'
miRNA:   3'- aCCG-----UGGCGGGCCGGGGUagaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 30120 0.68 0.28609
Target:  5'- cGGCauuGCCGUCCGGCUgCGauacCUCGgGCa -3'
miRNA:   3'- aCCG---UGGCGGGCCGGgGUa---GAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 32906 0.68 0.28609
Target:  5'- gGGUgaGCCaCCCGGCCCg--CUCGgGCg -3'
miRNA:   3'- aCCG--UGGcGGGCCGGGguaGAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 35740 0.89 0.008739
Target:  5'- cGGCGCUGCCCGGCCCCAcgUUCAUGUa -3'
miRNA:   3'- aCCGUGGCGGGCCGGGGUa-GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 36467 0.73 0.142387
Target:  5'- gUGaGCACCGCCCaccaCCCgAUCUCGCGg -3'
miRNA:   3'- -AC-CGUGGCGGGcc--GGGgUAGAGUGCg -5'
23235 3' -62.7 NC_005259.1 + 36874 0.72 0.174464
Target:  5'- cUGGCACCGCCCGcGCCgacgacgCCGgugaGCGCc -3'
miRNA:   3'- -ACCGUGGCGGGC-CGG-------GGUagagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 37384 0.69 0.27874
Target:  5'- cGGCACCGCCCGccgcgccGCCCaugguguugUUgACGCc -3'
miRNA:   3'- aCCGUGGCGGGC-------CGGGgua------GAgUGCG- -5'
23235 3' -62.7 NC_005259.1 + 38977 0.67 0.344145
Target:  5'- aUGGCAucgcggauaccCUGCCCaGCCUCGUUgaGCGCg -3'
miRNA:   3'- -ACCGU-----------GGCGGGcCGGGGUAGagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 39633 0.67 0.336445
Target:  5'- -cGCGCUGCCCGGUuuguUCCGUCcUACGg -3'
miRNA:   3'- acCGUGGCGGGCCG----GGGUAGaGUGCg -5'
23235 3' -62.7 NC_005259.1 + 42223 0.7 0.218707
Target:  5'- -cGCGCCGCcguccCCGGCCaucucgaCCAcCUCGCGCu -3'
miRNA:   3'- acCGUGGCG-----GGCCGG-------GGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 42515 0.7 0.241869
Target:  5'- gUGGCcagcaGCCGUCCGGCCCCGaugggCAC-Cg -3'
miRNA:   3'- -ACCG-----UGGCGGGCCGGGGUaga--GUGcG- -5'
23235 3' -62.7 NC_005259.1 + 42640 0.67 0.359922
Target:  5'- aGGCACC--UCGGCCCCGaugugggCggcCACGCg -3'
miRNA:   3'- aCCGUGGcgGGCCGGGGUa------Ga--GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 44516 0.75 0.095915
Target:  5'- cUGGCcacccacgccGCCGCCCGGCaguCCA-CUCAUGCc -3'
miRNA:   3'- -ACCG----------UGGCGGGCCGg--GGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 44688 0.66 0.42791
Target:  5'- gUGGC-CCGCauaUGGCCCgCGUCcCACcCg -3'
miRNA:   3'- -ACCGuGGCGg--GCCGGG-GUAGaGUGcG- -5'
23235 3' -62.7 NC_005259.1 + 45022 0.68 0.321424
Target:  5'- -cGCGCCGCCCuGCUUCAUgagcugCUCGCGg -3'
miRNA:   3'- acCGUGGCGGGcCGGGGUA------GAGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.