miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 3' -62.7 NC_005259.1 + 46306 0.7 0.213884
Target:  5'- gUGGCugCGUUguucgCGGCCCCgaggGUCgcgUCGCGCa -3'
miRNA:   3'- -ACCGugGCGG-----GCCGGGG----UAG---AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 46369 1.11 0.000183
Target:  5'- aUGGCACCGCCCGGCCCCAUCUCACGCa -3'
miRNA:   3'- -ACCGUGGCGGGCCGGGGUAGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 47765 0.66 0.410205
Target:  5'- cGGCugCGCgaUGGCCUUuuggaaaUCGCGCa -3'
miRNA:   3'- aCCGugGCGg-GCCGGGGuag----AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 48143 0.67 0.344145
Target:  5'- --cCGCCGcCCCGGCCaCCAcCUCGCcCg -3'
miRNA:   3'- accGUGGC-GGGCCGG-GGUaGAGUGcG- -5'
23235 3' -62.7 NC_005259.1 + 48540 0.69 0.279402
Target:  5'- cGGCGCUGUcgCCGGUCUUGUUguaCGCGCg -3'
miRNA:   3'- aCCGUGGCG--GGCCGGGGUAGa--GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 49669 0.7 0.213353
Target:  5'- -cGCGCCuGCUCGGCCUgGUagucggcCUCGCGCu -3'
miRNA:   3'- acCGUGG-CGGGCCGGGgUA-------GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 51217 0.66 0.42791
Target:  5'- cGGUagaucACCGCCggaucguaGGCCCgGUacgUCACGCc -3'
miRNA:   3'- aCCG-----UGGCGGg-------CCGGGgUAg--AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 52246 0.77 0.077397
Target:  5'- --cUACCGCCCGGCCCC-UCUCAgGg -3'
miRNA:   3'- accGUGGCGGGCCGGGGuAGAGUgCg -5'
23235 3' -62.7 NC_005259.1 + 52963 0.69 0.279402
Target:  5'- cGcCGCUGCCCGGCUgCAUCggcaagCAUGUg -3'
miRNA:   3'- aCcGUGGCGGGCCGGgGUAGa-----GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 53205 0.66 0.392962
Target:  5'- cGGCGaucagauucgcgUCGCCCGcGCCCUgcuugaggUUCGCGCc -3'
miRNA:   3'- aCCGU------------GGCGGGC-CGGGGua------GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 53531 0.67 0.344145
Target:  5'- cGGCACgggcucggUGCCCGGUgUCggCUCGgGCg -3'
miRNA:   3'- aCCGUG--------GCGGGCCGgGGuaGAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 55586 0.7 0.219249
Target:  5'- --cCGCCGCgCUGGCCacgcgauaccaCGUCUCGCGCg -3'
miRNA:   3'- accGUGGCG-GGCCGGg----------GUAGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 56262 0.74 0.118569
Target:  5'- cGGCcuugagcgccGCCGCCCGGCCCgUAUCggCACcaGCa -3'
miRNA:   3'- aCCG----------UGGCGGGCCGGG-GUAGa-GUG--CG- -5'
23235 3' -62.7 NC_005259.1 + 58821 0.68 0.321424
Target:  5'- -cGCGCUGCUCGGCaCCCucgccgcccucgGUCUCACc- -3'
miRNA:   3'- acCGUGGCGGGCCG-GGG------------UAGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 59905 0.66 0.376198
Target:  5'- uUGGUGCCGaCacaGuGCCCCGUCcauaccaagCACGCg -3'
miRNA:   3'- -ACCGUGGCgGg--C-CGGGGUAGa--------GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 61630 0.67 0.328871
Target:  5'- cGGCACCGCCgaCGGUgaacucaCCGgucagCUCAaCGCg -3'
miRNA:   3'- aCCGUGGCGG--GCCGg------GGUa----GAGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 62005 0.78 0.064047
Target:  5'- gGGCACCGUgCGGUguaCCCG-CUCGCGCu -3'
miRNA:   3'- aCCGUGGCGgGCCG---GGGUaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 62956 0.68 0.292904
Target:  5'- gGGCACCGCUguccucguCGucuuCCUCGUCcUCGCGCg -3'
miRNA:   3'- aCCGUGGCGG--------GCc---GGGGUAG-AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 66184 0.67 0.367998
Target:  5'- cGGCACCGCugCCGGUgCaguacggGUCagGCGCg -3'
miRNA:   3'- aCCGUGGCG--GGCCGgGg------UAGagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 66258 0.66 0.384519
Target:  5'- -aGCGCgGCCCGcGCCgggCGgcggCUCACGCc -3'
miRNA:   3'- acCGUGgCGGGC-CGGg--GUa---GAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.