miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 3' -62.7 NC_005259.1 + 38977 0.67 0.344145
Target:  5'- aUGGCAucgcggauaccCUGCCCaGCCUCGUUgaGCGCg -3'
miRNA:   3'- -ACCGU-----------GGCGGGcCGGGGUAGagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 53531 0.67 0.344145
Target:  5'- cGGCACgggcucggUGCCCGGUgUCggCUCGgGCg -3'
miRNA:   3'- aCCGUG--------GCGGGCCGgGGuaGAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 9710 0.67 0.344145
Target:  5'- gGGCACCGuCCuCGGgCCgGUCgagCuCGCc -3'
miRNA:   3'- aCCGUGGC-GG-GCCgGGgUAGa--GuGCG- -5'
23235 3' -62.7 NC_005259.1 + 48143 0.67 0.344145
Target:  5'- --cCGCCGcCCCGGCCaCCAcCUCGCcCg -3'
miRNA:   3'- accGUGGC-GGGCCGG-GGUaGAGUGcG- -5'
23235 3' -62.7 NC_005259.1 + 7279 0.67 0.351971
Target:  5'- cGGCuACCGCCCcGCCCCcaagCACu- -3'
miRNA:   3'- aCCG-UGGCGGGcCGGGGuagaGUGcg -5'
23235 3' -62.7 NC_005259.1 + 42640 0.67 0.359922
Target:  5'- aGGCACC--UCGGCCCCGaugugggCggcCACGCg -3'
miRNA:   3'- aCCGUGGcgGGCCGGGGUa------Ga--GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 4800 0.67 0.367998
Target:  5'- aGGUACUGCCCGaGCUgCCAgacgUUGCGCc -3'
miRNA:   3'- aCCGUGGCGGGC-CGG-GGUag--AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 67748 0.68 0.292904
Target:  5'- cGGCcacuagGCCGcCCCGGCCaCCGgccacCgacCACGCg -3'
miRNA:   3'- aCCG------UGGC-GGGCCGG-GGUa----Ga--GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 45022 0.68 0.321424
Target:  5'- -cGCGCCGCCCuGCUUCAUgagcugCUCGCGg -3'
miRNA:   3'- acCGUGGCGGGcCGGGGUA------GAGUGCg -5'
23235 3' -62.7 NC_005259.1 + 58821 0.68 0.321424
Target:  5'- -cGCGCUGCUCGGCaCCCucgccgcccucgGUCUCACc- -3'
miRNA:   3'- acCGUGGCGGGCCG-GGG------------UAGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 8795 0.68 0.292904
Target:  5'- cGGC-CCGCuuGGCgaggaUCuUCUCGCGCc -3'
miRNA:   3'- aCCGuGGCGggCCGg----GGuAGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 8009 0.68 0.292904
Target:  5'- cGGUAgcccCCGcCCCGGCggccacCCCGUUUCGCGa -3'
miRNA:   3'- aCCGU----GGC-GGGCCG------GGGUAGAGUGCg -5'
23235 3' -62.7 NC_005259.1 + 62956 0.68 0.292904
Target:  5'- gGGCACCGCUguccucguCGucuuCCUCGUCcUCGCGCg -3'
miRNA:   3'- aCCGUGGCGG--------GCc---GGGGUAG-AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 30120 0.68 0.28609
Target:  5'- cGGCauuGCCGUCCGGCUgCGauacCUCGgGCa -3'
miRNA:   3'- aCCG---UGGCGGGCCGGgGUa---GAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 32906 0.68 0.28609
Target:  5'- gGGUgaGCCaCCCGGCCCg--CUCGgGCg -3'
miRNA:   3'- aCCG--UGGcGGGCCGGGguaGAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 7177 0.68 0.285416
Target:  5'- gGGCACCggcgaguGCCCGGCCUg--CggACGCa -3'
miRNA:   3'- aCCGUGG-------CGGGCCGGGguaGagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 52963 0.69 0.279402
Target:  5'- cGcCGCUGCCCGGCUgCAUCggcaagCAUGUg -3'
miRNA:   3'- aCcGUGGCGGGCCGGgGUAGa-----GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 48540 0.69 0.279402
Target:  5'- cGGCGCUGUcgCCGGUCUUGUUguaCGCGCg -3'
miRNA:   3'- aCCGUGGCG--GGCCGGGGUAGa--GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 37384 0.69 0.27874
Target:  5'- cGGCACCGCCCGccgcgccGCCCaugguguugUUgACGCc -3'
miRNA:   3'- aCCGUGGCGGGC-------CGGGgua------GAgUGCG- -5'
23235 3' -62.7 NC_005259.1 + 6495 0.69 0.270248
Target:  5'- gGGUACUG-CUGGCCCaCAUCgaccgacgccgugCGCGCg -3'
miRNA:   3'- aCCGUGGCgGGCCGGG-GUAGa------------GUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.