miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 3' -62.7 NC_005259.1 + 42515 0.7 0.241869
Target:  5'- gUGGCcagcaGCCGUCCGGCCCCGaugggCAC-Cg -3'
miRNA:   3'- -ACCG-----UGGCGGGCCGGGGUaga--GUGcG- -5'
23235 3' -62.7 NC_005259.1 + 20694 0.69 0.246021
Target:  5'- cGGCACgCGCUCGGUggucgaagguuucaCCCcgC-CGCGCg -3'
miRNA:   3'- aCCGUG-GCGGGCCG--------------GGGuaGaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 1606 0.69 0.260084
Target:  5'- gGGCACaa-UUGGCCCuCGUCUCGuCGCu -3'
miRNA:   3'- aCCGUGgcgGGCCGGG-GUAGAGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 6495 0.69 0.270248
Target:  5'- gGGUACUG-CUGGCCCaCAUCgaccgacgccgugCGCGCg -3'
miRNA:   3'- aCCGUGGCgGGCCGGG-GUAGa------------GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 37384 0.69 0.27874
Target:  5'- cGGCACCGCCCGccgcgccGCCCaugguguugUUgACGCc -3'
miRNA:   3'- aCCGUGGCGGGC-------CGGGgua------GAgUGCG- -5'
23235 3' -62.7 NC_005259.1 + 48540 0.69 0.279402
Target:  5'- cGGCGCUGUcgCCGGUCUUGUUguaCGCGCg -3'
miRNA:   3'- aCCGUGGCG--GGCCGGGGUAGa--GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 52963 0.69 0.279402
Target:  5'- cGcCGCUGCCCGGCUgCAUCggcaagCAUGUg -3'
miRNA:   3'- aCcGUGGCGGGCCGGgGUAGa-----GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 7177 0.68 0.285416
Target:  5'- gGGCACCggcgaguGCCCGGCCUg--CggACGCa -3'
miRNA:   3'- aCCGUGG-------CGGGCCGGGguaGagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 32906 0.68 0.28609
Target:  5'- gGGUgaGCCaCCCGGCCCg--CUCGgGCg -3'
miRNA:   3'- aCCG--UGGcGGGCCGGGguaGAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 30120 0.68 0.28609
Target:  5'- cGGCauuGCCGUCCGGCUgCGauacCUCGgGCa -3'
miRNA:   3'- aCCG---UGGCGGGCCGGgGUa---GAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 8795 0.68 0.292904
Target:  5'- cGGC-CCGCuuGGCgaggaUCuUCUCGCGCc -3'
miRNA:   3'- aCCGuGGCGggCCGg----GGuAGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 67748 0.68 0.292904
Target:  5'- cGGCcacuagGCCGcCCCGGCCaCCGgccacCgacCACGCg -3'
miRNA:   3'- aCCG------UGGC-GGGCCGG-GGUa----Ga--GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 62956 0.68 0.292904
Target:  5'- gGGCACCGCUguccucguCGucuuCCUCGUCcUCGCGCg -3'
miRNA:   3'- aCCGUGGCGG--------GCc---GGGGUAG-AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 8009 0.68 0.292904
Target:  5'- cGGUAgcccCCGcCCCGGCggccacCCCGUUUCGCGa -3'
miRNA:   3'- aCCGU----GGC-GGGCCG------GGGUAGAGUGCg -5'
23235 3' -62.7 NC_005259.1 + 58821 0.68 0.321424
Target:  5'- -cGCGCUGCUCGGCaCCCucgccgcccucgGUCUCACc- -3'
miRNA:   3'- acCGUGGCGGGCCG-GGG------------UAGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 45022 0.68 0.321424
Target:  5'- -cGCGCCGCCCuGCUUCAUgagcugCUCGCGg -3'
miRNA:   3'- acCGUGGCGGGcCGGGGUA------GAGUGCg -5'
23235 3' -62.7 NC_005259.1 + 19373 0.67 0.328871
Target:  5'- aGGCcCCGCugaucaCCGGCCCCAaCggcaGCGUc -3'
miRNA:   3'- aCCGuGGCG------GGCCGGGGUaGag--UGCG- -5'
23235 3' -62.7 NC_005259.1 + 61630 0.67 0.328871
Target:  5'- cGGCACCGCCgaCGGUgaacucaCCGgucagCUCAaCGCg -3'
miRNA:   3'- aCCGUGGCGG--GCCGg------GGUa----GAGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 19653 0.67 0.335682
Target:  5'- cGGCACCGCCuCGGgcagccgcuacauCCCCGg-UCAgGUc -3'
miRNA:   3'- aCCGUGGCGG-GCC-------------GGGGUagAGUgCG- -5'
23235 3' -62.7 NC_005259.1 + 39633 0.67 0.336445
Target:  5'- -cGCGCUGCCCGGUuuguUCCGUCcUACGg -3'
miRNA:   3'- acCGUGGCGGGCCG----GGGUAGaGUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.