miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 44472 0.66 0.232333
Target:  5'- cCGCCGcccuGGCCGGGCcaguuGGUGaCGUagaccggGGUGCc -3'
miRNA:   3'- -GCGGC----CCGGCCCG-----UCGC-GCGg------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 44551 0.7 0.113606
Target:  5'- uGCCGagaccGGCa-GGCAGCGCGCCGaccgGCa -3'
miRNA:   3'- gCGGC-----CCGgcCCGUCGCGCGGCca--CG- -5'
23236 5' -67.8 NC_005259.1 + 45305 0.66 0.255197
Target:  5'- gCGCCGGugacGCCGaGGCcGC-CGCCGaacUGCg -3'
miRNA:   3'- -GCGGCC----CGGC-CCGuCGcGCGGCc--ACG- -5'
23236 5' -67.8 NC_005259.1 + 45491 0.68 0.173922
Target:  5'- cCGCUGGuggccuuggucGCUGuGGCcacCGCGCCGGUGUu -3'
miRNA:   3'- -GCGGCC-----------CGGC-CCGuc-GCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 45534 0.67 0.216337
Target:  5'- cCGCCGuGGCugcgagCGGGUuGCuCGCCGG-GCc -3'
miRNA:   3'- -GCGGC-CCG------GCCCGuCGcGCGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 45627 1.09 0.000103
Target:  5'- cCGCCGGGCCGGGCAGCGCGCCGGUGCc -3'
miRNA:   3'- -GCGGCCCGGCCCGUCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 47967 0.69 0.138036
Target:  5'- cCGCCGcGccgcccgcgaauauGCCGGGCAGCGCaagaCCGGcuUGUg -3'
miRNA:   3'- -GCGGC-C--------------CGGCCCGUCGCGc---GGCC--ACG- -5'
23236 5' -67.8 NC_005259.1 + 50413 0.72 0.084326
Target:  5'- gCGCCGGuGCCuugaccggcucGGGCAGCGgugcgggcucgggguCGCCGGUcucGCu -3'
miRNA:   3'- -GCGGCC-CGG-----------CCCGUCGC---------------GCGGCCA---CG- -5'
23236 5' -67.8 NC_005259.1 + 50652 0.8 0.020543
Target:  5'- cCGCCcucgGGGCCauaGGGCaccAGCGCGUCGGUGCc -3'
miRNA:   3'- -GCGG----CCCGG---CCCG---UCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 51538 0.7 0.127668
Target:  5'- uGCacgGGGCCGGGCaagugcacgacguuGGgGCcaacgauccggcaGCCGGUGCc -3'
miRNA:   3'- gCGg--CCCGGCCCG--------------UCgCG-------------CGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 51674 0.73 0.076805
Target:  5'- gCGUCGGGCaCGGGC-GCGCGauggucucauaGGUGCc -3'
miRNA:   3'- -GCGGCCCG-GCCCGuCGCGCgg---------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 52249 0.66 0.234539
Target:  5'- cCGCCcggccccucucagggGGGCCGGGCAGacaG-GaCCGGcccgaUGCg -3'
miRNA:   3'- -GCGG---------------CCCGGCCCGUCg--CgC-GGCC-----ACG- -5'
23236 5' -67.8 NC_005259.1 + 53525 0.69 0.146222
Target:  5'- gGCCaGcGGCaCGGGCucGGUGC-CCGGUGUc -3'
miRNA:   3'- gCGG-C-CCG-GCCCG--UCGCGcGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 53665 0.71 0.097435
Target:  5'- gGCCGaGGCCccacgcGGGCAuCGCGauGGUGCg -3'
miRNA:   3'- gCGGC-CCGG------CCCGUcGCGCggCCACG- -5'
23236 5' -67.8 NC_005259.1 + 54500 0.66 0.237882
Target:  5'- uCGgCGGGCauGGCGGCGaUGUgGGgugGCg -3'
miRNA:   3'- -GCgGCCCGgcCCGUCGC-GCGgCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 56027 0.69 0.139079
Target:  5'- uCGCCGGGCgggacuuccuCGGGCGGC-UGCgGGUa- -3'
miRNA:   3'- -GCGGCCCG----------GCCCGUCGcGCGgCCAcg -5'
23236 5' -67.8 NC_005259.1 + 58569 0.74 0.059453
Target:  5'- gGuuGGGCCGGaucGCGGCGCggcuGCCGG-GCc -3'
miRNA:   3'- gCggCCCGGCC---CGUCGCG----CGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 58962 0.7 0.125746
Target:  5'- gGCCagcaGGUCGGGCAGCuCGUCGGcgacgGCg -3'
miRNA:   3'- gCGGc---CCGGCCCGUCGcGCGGCCa----CG- -5'
23236 5' -67.8 NC_005259.1 + 59137 0.67 0.211218
Target:  5'- gCGUCGaGCUcGGCAGCgGUGCCGGggaGCu -3'
miRNA:   3'- -GCGGCcCGGcCCGUCG-CGCGGCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 60223 0.68 0.182656
Target:  5'- uCGUCGGcGCUGagcucgcuGGCAcgcuuGCGUGCgGGUGCa -3'
miRNA:   3'- -GCGGCC-CGGC--------CCGU-----CGCGCGgCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.