miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 24233 0.68 0.161519
Target:  5'- gGCgGGGCCGaGGCAcGCGaguuCGgCGaGUGCg -3'
miRNA:   3'- gCGgCCCGGC-CCGU-CGC----GCgGC-CACG- -5'
23236 5' -67.8 NC_005259.1 + 25928 0.75 0.052127
Target:  5'- cCGCCGGuCCGGuG-AGCGCacGCCGGUGCc -3'
miRNA:   3'- -GCGGCCcGGCC-CgUCGCG--CGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 26026 0.7 0.116534
Target:  5'- cCGCaagCGGGuuGGccaGCAGCGcCGCCGGguugGCc -3'
miRNA:   3'- -GCG---GCCCggCC---CGUCGC-GCGGCCa---CG- -5'
23236 5' -67.8 NC_005259.1 + 26145 0.69 0.139079
Target:  5'- cCGCCGaGGCCGaGCAGCccgaaaaugcccGCGuCCuGUGCg -3'
miRNA:   3'- -GCGGC-CCGGCcCGUCG------------CGC-GGcCACG- -5'
23236 5' -67.8 NC_005259.1 + 26347 0.68 0.165562
Target:  5'- aCGCCcucGGGCCGaGCuGCGCGUagauguCGGUGg -3'
miRNA:   3'- -GCGG---CCCGGCcCGuCGCGCG------GCCACg -5'
23236 5' -67.8 NC_005259.1 + 26406 0.69 0.153698
Target:  5'- aCGCCGGG-CGcGGCGGUGCcGCCGuagaacGCa -3'
miRNA:   3'- -GCGGCCCgGC-CCGUCGCG-CGGCca----CG- -5'
23236 5' -67.8 NC_005259.1 + 26439 0.66 0.243542
Target:  5'- cCGCCGagcGGgCGGGcCGGUGgGCCGaUGUg -3'
miRNA:   3'- -GCGGC---CCgGCCC-GUCGCgCGGCcACG- -5'
23236 5' -67.8 NC_005259.1 + 26803 0.69 0.153316
Target:  5'- cCGCCGcccgguuGGCCGguaccGGCGGUgGUGCCGGgGCg -3'
miRNA:   3'- -GCGGC-------CCGGC-----CCGUCG-CGCGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 27393 0.66 0.243542
Target:  5'- gCGgCGGuGUCGGcaGCGGCGgcaGCuCGGUGCc -3'
miRNA:   3'- -GCgGCC-CGGCC--CGUCGCg--CG-GCCACG- -5'
23236 5' -67.8 NC_005259.1 + 27999 0.72 0.092546
Target:  5'- uGCgGGuGCCgGGGCGGgGuCGCCGGgguUGCg -3'
miRNA:   3'- gCGgCC-CGG-CCCGUCgC-GCGGCC---ACG- -5'
23236 5' -67.8 NC_005259.1 + 28770 0.66 0.243542
Target:  5'- uCGCCGGuGCCGacgaGGUAcC-CGCCGGUcGCu -3'
miRNA:   3'- -GCGGCC-CGGC----CCGUcGcGCGGCCA-CG- -5'
23236 5' -67.8 NC_005259.1 + 29088 0.67 0.196484
Target:  5'- uGCCaaGGCCGGGUGGUGaGCUGaUGCg -3'
miRNA:   3'- gCGGc-CCGGCCCGUCGCgCGGCcACG- -5'
23236 5' -67.8 NC_005259.1 + 30802 0.71 0.097435
Target:  5'- cCGCCGGaacaccugaGUCGGGUaguccGGCGCGCCGaGgucgGCa -3'
miRNA:   3'- -GCGGCC---------CGGCCCG-----UCGCGCGGC-Ca---CG- -5'
23236 5' -67.8 NC_005259.1 + 34176 0.66 0.237322
Target:  5'- uGCCGGaacacaCCGGGCAGUG-GCucggcaaCGGUGUu -3'
miRNA:   3'- gCGGCCc-----GGCCCGUCGCgCG-------GCCACG- -5'
23236 5' -67.8 NC_005259.1 + 34449 0.69 0.135629
Target:  5'- uGCCGa-CCGGGCAGCGUGUCGcUGa -3'
miRNA:   3'- gCGGCccGGCCCGUCGCGCGGCcACg -5'
23236 5' -67.8 NC_005259.1 + 37224 0.68 0.182656
Target:  5'- cCGCCGGGgCGcuGGCc-CGUGCCGGauugGCu -3'
miRNA:   3'- -GCGGCCCgGC--CCGucGCGCGGCCa---CG- -5'
23236 5' -67.8 NC_005259.1 + 41385 0.66 0.232333
Target:  5'- aGCUuGGCCGGuacccauGGCGCGCCgcucggGGUGCc -3'
miRNA:   3'- gCGGcCCGGCCcg-----UCGCGCGG------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 41570 0.66 0.249313
Target:  5'- cCGCCGGaaguauCCGuugagcgugagcGGUcGCGCGUCGGUGUu -3'
miRNA:   3'- -GCGGCCc-----GGC------------CCGuCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 43783 0.74 0.066717
Target:  5'- uCGCCGGGCauGaGCAGCGCgggcaccgaguccuuGCCGG-GCg -3'
miRNA:   3'- -GCGGCCCGgcC-CGUCGCG---------------CGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 44155 0.75 0.050771
Target:  5'- aCGUgcGGUCGaGCAGCGCGCCGGUGUc -3'
miRNA:   3'- -GCGgcCCGGCcCGUCGCGCGGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.