Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23236 | 5' | -67.8 | NC_005259.1 | + | 8956 | 0.71 | 0.097435 |
Target: 5'- gCGCCGuGGaCGGGCAcCGUGCCGGgacGUa -3' miRNA: 3'- -GCGGC-CCgGCCCGUcGCGCGGCCa--CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 11439 | 0.7 | 0.113606 |
Target: 5'- uGCuUGGGCCGcucGCuGC-CGCCGGUGCc -3' miRNA: 3'- gCG-GCCCGGCc--CGuCGcGCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 44551 | 0.7 | 0.113606 |
Target: 5'- uGCCGagaccGGCa-GGCAGCGCGCCGaccgGCa -3' miRNA: 3'- gCGGC-----CCGgcCCGUCGCGCGGCca--CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 26026 | 0.7 | 0.116534 |
Target: 5'- cCGCaagCGGGuuGGccaGCAGCGcCGCCGGguugGCc -3' miRNA: 3'- -GCG---GCCCggCC---CGUCGC-GCGGCCa---CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 61913 | 0.7 | 0.122603 |
Target: 5'- uCGCCGGucGUCGucGGCAGCucggucucucGCGCgGGUGCc -3' miRNA: 3'- -GCGGCC--CGGC--CCGUCG----------CGCGgCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 58962 | 0.7 | 0.125746 |
Target: 5'- gGCCagcaGGUCGGGCAGCuCGUCGGcgacgGCg -3' miRNA: 3'- gCGGc---CCGGCCCGUCGcGCGGCCa----CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 51538 | 0.7 | 0.127668 |
Target: 5'- uGCacgGGGCCGGGCaagugcacgacguuGGgGCcaacgauccggcaGCCGGUGCc -3' miRNA: 3'- gCGg--CCCGGCCCG--------------UCgCG-------------CGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 68796 | 0.7 | 0.128964 |
Target: 5'- aCGCCGGGgCGGuGuCGGUGC-CCGGUa- -3' miRNA: 3'- -GCGGCCCgGCC-C-GUCGCGcGGCCAcg -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 34449 | 0.69 | 0.135629 |
Target: 5'- uGCCGa-CCGGGCAGCGUGUCGcUGa -3' miRNA: 3'- gCGGCccGGCCCGUCGCGCGGCcACg -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 47967 | 0.69 | 0.138036 |
Target: 5'- cCGCCGcGccgcccgcgaauauGCCGGGCAGCGCaagaCCGGcuUGUg -3' miRNA: 3'- -GCGGC-C--------------CGGCCCGUCGCGc---GGCC--ACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 56027 | 0.69 | 0.139079 |
Target: 5'- uCGCCGGGCgggacuuccuCGGGCGGC-UGCgGGUa- -3' miRNA: 3'- -GCGGCCCG----------GCCCGUCGcGCGgCCAcg -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 26145 | 0.69 | 0.139079 |
Target: 5'- cCGCCGaGGCCGaGCAGCccgaaaaugcccGCGuCCuGUGCg -3' miRNA: 3'- -GCGGC-CCGGCcCGUCG------------CGC-GGcCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 9127 | 0.69 | 0.146222 |
Target: 5'- gCGCCccGGuaCGGGCAGcCGUGCUcGUGCc -3' miRNA: 3'- -GCGG--CCcgGCCCGUC-GCGCGGcCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 53525 | 0.69 | 0.146222 |
Target: 5'- gGCCaGcGGCaCGGGCucGGUGC-CCGGUGUc -3' miRNA: 3'- gCGG-C-CCG-GCCCG--UCGCGcGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 8759 | 0.69 | 0.149918 |
Target: 5'- gGUCGaGGCCcuuGGcCAGCGCGgCGGUGa -3' miRNA: 3'- gCGGC-CCGGc--CC-GUCGCGCgGCCACg -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 67413 | 0.69 | 0.149918 |
Target: 5'- gGCCgacaccaucggGGuGCCGGGCucacgcuugAGCGCGUCGGggaUGCc -3' miRNA: 3'- gCGG-----------CC-CGGCCCG---------UCGCGCGGCC---ACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 26803 | 0.69 | 0.153316 |
Target: 5'- cCGCCGcccgguuGGCCGguaccGGCGGUgGUGCCGGgGCg -3' miRNA: 3'- -GCGGC-------CCGGC-----CCGUCG-CGCGGCCaCG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 26406 | 0.69 | 0.153698 |
Target: 5'- aCGCCGGG-CGcGGCGGUGCcGCCGuagaacGCa -3' miRNA: 3'- -GCGGCCCgGC-CCGUCGCG-CGGCca----CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 7208 | 0.69 | 0.157174 |
Target: 5'- -aCCGGGCugcgguggaucugCGugaugaacgacGGCAGcCGCGCCGGUGUc -3' miRNA: 3'- gcGGCCCG-------------GC-----------CCGUC-GCGCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 63713 | 0.68 | 0.161519 |
Target: 5'- aGCgGGGaUCGGGgccuGCGCaGCCGGUaGCg -3' miRNA: 3'- gCGgCCC-GGCCCgu--CGCG-CGGCCA-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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