miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 9598 0.67 0.201293
Target:  5'- gGUCuGGCCGuagagcaccguGGCAucgaacacCGCGCCGGUGCc -3'
miRNA:   3'- gCGGcCCGGC-----------CCGUc-------GCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 29088 0.67 0.196484
Target:  5'- uGCCaaGGCCGGGUGGUGaGCUGaUGCg -3'
miRNA:   3'- gCGGc-CCGGCCCGUCGCgCGGCcACG- -5'
23236 5' -67.8 NC_005259.1 + 14754 0.67 0.196009
Target:  5'- gGCCGGGCCGGugauccuGCAcaaCGCGCCGu--- -3'
miRNA:   3'- gCGGCCCGGCC-------CGUc--GCGCGGCcacg -5'
23236 5' -67.8 NC_005259.1 + 67255 0.67 0.187167
Target:  5'- aGCgGGGCCucGGGCAGCcGUGUCGcGUc- -3'
miRNA:   3'- gCGgCCCGG--CCCGUCG-CGCGGC-CAcg -5'
23236 5' -67.8 NC_005259.1 + 60223 0.68 0.182656
Target:  5'- uCGUCGGcGCUGagcucgcuGGCAcgcuuGCGUGCgGGUGCa -3'
miRNA:   3'- -GCGGCC-CGGC--------CCGU-----CGCGCGgCCACG- -5'
23236 5' -67.8 NC_005259.1 + 37224 0.68 0.182656
Target:  5'- cCGCCGGGgCGcuGGCc-CGUGCCGGauugGCu -3'
miRNA:   3'- -GCGGCCCgGC--CCGucGCGCGGCCa---CG- -5'
23236 5' -67.8 NC_005259.1 + 23296 0.68 0.182656
Target:  5'- gGuuGGGUauCGGGgucCGGCGCGgUCGGUGUc -3'
miRNA:   3'- gCggCCCG--GCCC---GUCGCGC-GGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 18852 0.68 0.178242
Target:  5'- uCGCCGGuGCCGuGCAacgguuGCGCGCgUGGgagGCc -3'
miRNA:   3'- -GCGGCC-CGGCcCGU------CGCGCG-GCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 45491 0.68 0.173922
Target:  5'- cCGCUGGuggccuuggucGCUGuGGCcacCGCGCCGGUGUu -3'
miRNA:   3'- -GCGGCC-----------CGGC-CCGuc-GCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 26347 0.68 0.165562
Target:  5'- aCGCCcucGGGCCGaGCuGCGCGUagauguCGGUGg -3'
miRNA:   3'- -GCGG---CCCGGCcCGuCGCGCG------GCCACg -5'
23236 5' -67.8 NC_005259.1 + 24233 0.68 0.161519
Target:  5'- gGCgGGGCCGaGGCAcGCGaguuCGgCGaGUGCg -3'
miRNA:   3'- gCGgCCCGGC-CCGU-CGC----GCgGC-CACG- -5'
23236 5' -67.8 NC_005259.1 + 63713 0.68 0.161519
Target:  5'- aGCgGGGaUCGGGgccuGCGCaGCCGGUaGCg -3'
miRNA:   3'- gCGgCCC-GGCCCgu--CGCG-CGGCCA-CG- -5'
23236 5' -67.8 NC_005259.1 + 7208 0.69 0.157174
Target:  5'- -aCCGGGCugcgguggaucugCGugaugaacgacGGCAGcCGCGCCGGUGUc -3'
miRNA:   3'- gcGGCCCG-------------GC-----------CCGUC-GCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 26406 0.69 0.153698
Target:  5'- aCGCCGGG-CGcGGCGGUGCcGCCGuagaacGCa -3'
miRNA:   3'- -GCGGCCCgGC-CCGUCGCG-CGGCca----CG- -5'
23236 5' -67.8 NC_005259.1 + 26803 0.69 0.153316
Target:  5'- cCGCCGcccgguuGGCCGguaccGGCGGUgGUGCCGGgGCg -3'
miRNA:   3'- -GCGGC-------CCGGC-----CCGUCG-CGCGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 8759 0.69 0.149918
Target:  5'- gGUCGaGGCCcuuGGcCAGCGCGgCGGUGa -3'
miRNA:   3'- gCGGC-CCGGc--CC-GUCGCGCgGCCACg -5'
23236 5' -67.8 NC_005259.1 + 67413 0.69 0.149918
Target:  5'- gGCCgacaccaucggGGuGCCGGGCucacgcuugAGCGCGUCGGggaUGCc -3'
miRNA:   3'- gCGG-----------CC-CGGCCCG---------UCGCGCGGCC---ACG- -5'
23236 5' -67.8 NC_005259.1 + 53525 0.69 0.146222
Target:  5'- gGCCaGcGGCaCGGGCucGGUGC-CCGGUGUc -3'
miRNA:   3'- gCGG-C-CCG-GCCCG--UCGCGcGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 9127 0.69 0.146222
Target:  5'- gCGCCccGGuaCGGGCAGcCGUGCUcGUGCc -3'
miRNA:   3'- -GCGG--CCcgGCCCGUC-GCGCGGcCACG- -5'
23236 5' -67.8 NC_005259.1 + 56027 0.69 0.139079
Target:  5'- uCGCCGGGCgggacuuccuCGGGCGGC-UGCgGGUa- -3'
miRNA:   3'- -GCGGCCCG----------GCCCGUCGcGCGgCCAcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.