miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 56027 0.69 0.139079
Target:  5'- uCGCCGGGCgggacuuccuCGGGCGGC-UGCgGGUa- -3'
miRNA:   3'- -GCGGCCCG----------GCCCGUCGcGCGgCCAcg -5'
23236 5' -67.8 NC_005259.1 + 47967 0.69 0.138036
Target:  5'- cCGCCGcGccgcccgcgaauauGCCGGGCAGCGCaagaCCGGcuUGUg -3'
miRNA:   3'- -GCGGC-C--------------CGGCCCGUCGCGc---GGCC--ACG- -5'
23236 5' -67.8 NC_005259.1 + 34449 0.69 0.135629
Target:  5'- uGCCGa-CCGGGCAGCGUGUCGcUGa -3'
miRNA:   3'- gCGGCccGGCCCGUCGCGCGGCcACg -5'
23236 5' -67.8 NC_005259.1 + 68796 0.7 0.128964
Target:  5'- aCGCCGGGgCGGuGuCGGUGC-CCGGUa- -3'
miRNA:   3'- -GCGGCCCgGCC-C-GUCGCGcGGCCAcg -5'
23236 5' -67.8 NC_005259.1 + 51538 0.7 0.127668
Target:  5'- uGCacgGGGCCGGGCaagugcacgacguuGGgGCcaacgauccggcaGCCGGUGCc -3'
miRNA:   3'- gCGg--CCCGGCCCG--------------UCgCG-------------CGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 58962 0.7 0.125746
Target:  5'- gGCCagcaGGUCGGGCAGCuCGUCGGcgacgGCg -3'
miRNA:   3'- gCGGc---CCGGCCCGUCGcGCGGCCa----CG- -5'
23236 5' -67.8 NC_005259.1 + 61913 0.7 0.122603
Target:  5'- uCGCCGGucGUCGucGGCAGCucggucucucGCGCgGGUGCc -3'
miRNA:   3'- -GCGGCC--CGGC--CCGUCG----------CGCGgCCACG- -5'
23236 5' -67.8 NC_005259.1 + 26026 0.7 0.116534
Target:  5'- cCGCaagCGGGuuGGccaGCAGCGcCGCCGGguugGCc -3'
miRNA:   3'- -GCG---GCCCggCC---CGUCGC-GCGGCCa---CG- -5'
23236 5' -67.8 NC_005259.1 + 44551 0.7 0.113606
Target:  5'- uGCCGagaccGGCa-GGCAGCGCGCCGaccgGCa -3'
miRNA:   3'- gCGGC-----CCGgcCCGUCGCGCGGCca--CG- -5'
23236 5' -67.8 NC_005259.1 + 11439 0.7 0.113606
Target:  5'- uGCuUGGGCCGcucGCuGC-CGCCGGUGCc -3'
miRNA:   3'- gCG-GCCCGGCc--CGuCGcGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 30802 0.71 0.097435
Target:  5'- cCGCCGGaacaccugaGUCGGGUaguccGGCGCGCCGaGgucgGCa -3'
miRNA:   3'- -GCGGCC---------CGGCCCG-----UCGCGCGGC-Ca---CG- -5'
23236 5' -67.8 NC_005259.1 + 8956 0.71 0.097435
Target:  5'- gCGCCGuGGaCGGGCAcCGUGCCGGgacGUa -3'
miRNA:   3'- -GCGGC-CCgGCCCGUcGCGCGGCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 53665 0.71 0.097435
Target:  5'- gGCCGaGGCCccacgcGGGCAuCGCGauGGUGCg -3'
miRNA:   3'- gCGGC-CCGG------CCCGUcGCGCggCCACG- -5'
23236 5' -67.8 NC_005259.1 + 8820 0.71 0.094961
Target:  5'- gCGCCGGGCCGGugaguugacGCGcUGCGCCGaccaccacagcGUGCc -3'
miRNA:   3'- -GCGGCCCGGCC---------CGUcGCGCGGC-----------CACG- -5'
23236 5' -67.8 NC_005259.1 + 27999 0.72 0.092546
Target:  5'- uGCgGGuGCCgGGGCGGgGuCGCCGGgguUGCg -3'
miRNA:   3'- gCGgCC-CGG-CCCGUCgC-GCGGCC---ACG- -5'
23236 5' -67.8 NC_005259.1 + 50413 0.72 0.084326
Target:  5'- gCGCCGGuGCCuugaccggcucGGGCAGCGgugcgggcucgggguCGCCGGUcucGCu -3'
miRNA:   3'- -GCGGCC-CGG-----------CCCGUCGC---------------GCGGCCA---CG- -5'
23236 5' -67.8 NC_005259.1 + 51674 0.73 0.076805
Target:  5'- gCGUCGGGCaCGGGC-GCGCGauggucucauaGGUGCc -3'
miRNA:   3'- -GCGGCCCG-GCCCGuCGCGCgg---------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 13431 0.73 0.075223
Target:  5'- cCGCCgGGGCCGcgcuaGGCGugaccgucggcGCgGCGCUGGUGCu -3'
miRNA:   3'- -GCGG-CCCGGC-----CCGU-----------CG-CGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 5069 0.73 0.075223
Target:  5'- uCG-UGGGCCGGGUcGaCGgGCCGGUGUc -3'
miRNA:   3'- -GCgGCCCGGCCCGuC-GCgCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 17764 0.73 0.071404
Target:  5'- cCGCCGcGcGCCGGGCcgAGCGCaCCGagcGUGCg -3'
miRNA:   3'- -GCGGC-C-CGGCCCG--UCGCGcGGC---CACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.