miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 43783 0.74 0.066717
Target:  5'- uCGCCGGGCauGaGCAGCGCgggcaccgaguccuuGCCGG-GCg -3'
miRNA:   3'- -GCGGCCCGgcC-CGUCGCG---------------CGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 58569 0.74 0.059453
Target:  5'- gGuuGGGCCGGaucGCGGCGCggcuGCCGG-GCc -3'
miRNA:   3'- gCggCCCGGCC---CGUCGCG----CGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 60266 0.74 0.057912
Target:  5'- gGCUGGccaccagcgcuGCCGGGCGGCcaucguCGUCGGUGCg -3'
miRNA:   3'- gCGGCC-----------CGGCCCGUCGc-----GCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 25928 0.75 0.052127
Target:  5'- cCGCCGGuCCGGuG-AGCGCacGCCGGUGCc -3'
miRNA:   3'- -GCGGCCcGGCC-CgUCGCG--CGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 44155 0.75 0.050771
Target:  5'- aCGUgcGGUCGaGCAGCGCGCCGGUGUc -3'
miRNA:   3'- -GCGgcCCGGCcCGUCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 6447 0.76 0.041091
Target:  5'- cCGUCGcGCUGaucGGCAGCGuCGCCGGUGCc -3'
miRNA:   3'- -GCGGCcCGGC---CCGUCGC-GCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 63659 0.77 0.037948
Target:  5'- gGCCGGGacgccggacaccUCGGGCaccGGCGCGCCGGggaucUGCg -3'
miRNA:   3'- gCGGCCC------------GGCCCG---UCGCGCGGCC-----ACG- -5'
23236 5' -67.8 NC_005259.1 + 60531 0.77 0.033136
Target:  5'- gGCCGGGCCGGgacGCAGCcgcucgucggcauGC-CCGGUGCc -3'
miRNA:   3'- gCGGCCCGGCC---CGUCG-------------CGcGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 68699 0.78 0.027569
Target:  5'- -aUCGaGG-CGGGCAGCGCGUCGGUGCc -3'
miRNA:   3'- gcGGC-CCgGCCCGUCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 50652 0.8 0.020543
Target:  5'- cCGCCcucgGGGCCauaGGGCaccAGCGCGUCGGUGCc -3'
miRNA:   3'- -GCGG----CCCGG---CCCG---UCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 45627 1.09 0.000103
Target:  5'- cCGCCGGGCCGGGCAGCGCGCCGGUGCc -3'
miRNA:   3'- -GCGGCCCGGCCCGUCGCGCGGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.