Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23236 | 5' | -67.8 | NC_005259.1 | + | 45627 | 1.09 | 0.000103 |
Target: 5'- cCGCCGGGCCGGGCAGCGCGCCGGUGCc -3' miRNA: 3'- -GCGGCCCGGCCCGUCGCGCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 50652 | 0.8 | 0.020543 |
Target: 5'- cCGCCcucgGGGCCauaGGGCaccAGCGCGUCGGUGCc -3' miRNA: 3'- -GCGG----CCCGG---CCCG---UCGCGCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 68699 | 0.78 | 0.027569 |
Target: 5'- -aUCGaGG-CGGGCAGCGCGUCGGUGCc -3' miRNA: 3'- gcGGC-CCgGCCCGUCGCGCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 60531 | 0.77 | 0.033136 |
Target: 5'- gGCCGGGCCGGgacGCAGCcgcucgucggcauGC-CCGGUGCc -3' miRNA: 3'- gCGGCCCGGCC---CGUCG-------------CGcGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 63659 | 0.77 | 0.037948 |
Target: 5'- gGCCGGGacgccggacaccUCGGGCaccGGCGCGCCGGggaucUGCg -3' miRNA: 3'- gCGGCCC------------GGCCCG---UCGCGCGGCC-----ACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 6447 | 0.76 | 0.041091 |
Target: 5'- cCGUCGcGCUGaucGGCAGCGuCGCCGGUGCc -3' miRNA: 3'- -GCGGCcCGGC---CCGUCGC-GCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 44155 | 0.75 | 0.050771 |
Target: 5'- aCGUgcGGUCGaGCAGCGCGCCGGUGUc -3' miRNA: 3'- -GCGgcCCGGCcCGUCGCGCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 25928 | 0.75 | 0.052127 |
Target: 5'- cCGCCGGuCCGGuG-AGCGCacGCCGGUGCc -3' miRNA: 3'- -GCGGCCcGGCC-CgUCGCG--CGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 60266 | 0.74 | 0.057912 |
Target: 5'- gGCUGGccaccagcgcuGCCGGGCGGCcaucguCGUCGGUGCg -3' miRNA: 3'- gCGGCC-----------CGGCCCGUCGc-----GCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 58569 | 0.74 | 0.059453 |
Target: 5'- gGuuGGGCCGGaucGCGGCGCggcuGCCGG-GCc -3' miRNA: 3'- gCggCCCGGCC---CGUCGCG----CGGCCaCG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 43783 | 0.74 | 0.066717 |
Target: 5'- uCGCCGGGCauGaGCAGCGCgggcaccgaguccuuGCCGG-GCg -3' miRNA: 3'- -GCGGCCCGgcC-CGUCGCG---------------CGGCCaCG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 17764 | 0.73 | 0.071404 |
Target: 5'- cCGCCGcGcGCCGGGCcgAGCGCaCCGagcGUGCg -3' miRNA: 3'- -GCGGC-C-CGGCCCG--UCGCGcGGC---CACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 5069 | 0.73 | 0.075223 |
Target: 5'- uCG-UGGGCCGGGUcGaCGgGCCGGUGUc -3' miRNA: 3'- -GCgGCCCGGCCCGuC-GCgCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 13431 | 0.73 | 0.075223 |
Target: 5'- cCGCCgGGGCCGcgcuaGGCGugaccgucggcGCgGCGCUGGUGCu -3' miRNA: 3'- -GCGG-CCCGGC-----CCGU-----------CG-CGCGGCCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 51674 | 0.73 | 0.076805 |
Target: 5'- gCGUCGGGCaCGGGC-GCGCGauggucucauaGGUGCc -3' miRNA: 3'- -GCGGCCCG-GCCCGuCGCGCgg---------CCACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 50413 | 0.72 | 0.084326 |
Target: 5'- gCGCCGGuGCCuugaccggcucGGGCAGCGgugcgggcucgggguCGCCGGUcucGCu -3' miRNA: 3'- -GCGGCC-CGG-----------CCCGUCGC---------------GCGGCCA---CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 27999 | 0.72 | 0.092546 |
Target: 5'- uGCgGGuGCCgGGGCGGgGuCGCCGGgguUGCg -3' miRNA: 3'- gCGgCC-CGG-CCCGUCgC-GCGGCC---ACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 8820 | 0.71 | 0.094961 |
Target: 5'- gCGCCGGGCCGGugaguugacGCGcUGCGCCGaccaccacagcGUGCc -3' miRNA: 3'- -GCGGCCCGGCC---------CGUcGCGCGGC-----------CACG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 8956 | 0.71 | 0.097435 |
Target: 5'- gCGCCGuGGaCGGGCAcCGUGCCGGgacGUa -3' miRNA: 3'- -GCGGC-CCgGCCCGUcGCGCGGCCa--CG- -5' |
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23236 | 5' | -67.8 | NC_005259.1 | + | 53665 | 0.71 | 0.097435 |
Target: 5'- gGCCGaGGCCccacgcGGGCAuCGCGauGGUGCg -3' miRNA: 3'- gCGGC-CCGG------CCCGUcGCGCggCCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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