miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 45305 0.66 0.255197
Target:  5'- gCGCCGGugacGCCGaGGCcGC-CGCCGaacUGCg -3'
miRNA:   3'- -GCGGCC----CGGC-CCGuCGcGCGGCc--ACG- -5'
23236 5' -67.8 NC_005259.1 + 5069 0.73 0.075223
Target:  5'- uCG-UGGGCCGGGUcGaCGgGCCGGUGUc -3'
miRNA:   3'- -GCgGCCCGGCCCGuC-GCgCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 13431 0.73 0.075223
Target:  5'- cCGCCgGGGCCGcgcuaGGCGugaccgucggcGCgGCGCUGGUGCu -3'
miRNA:   3'- -GCGG-CCCGGC-----CCGU-----------CG-CGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 51674 0.73 0.076805
Target:  5'- gCGUCGGGCaCGGGC-GCGCGauggucucauaGGUGCc -3'
miRNA:   3'- -GCGGCCCG-GCCCGuCGCGCgg---------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 50413 0.72 0.084326
Target:  5'- gCGCCGGuGCCuugaccggcucGGGCAGCGgugcgggcucgggguCGCCGGUcucGCu -3'
miRNA:   3'- -GCGGCC-CGG-----------CCCGUCGC---------------GCGGCCA---CG- -5'
23236 5' -67.8 NC_005259.1 + 27999 0.72 0.092546
Target:  5'- uGCgGGuGCCgGGGCGGgGuCGCCGGgguUGCg -3'
miRNA:   3'- gCGgCC-CGG-CCCGUCgC-GCGGCC---ACG- -5'
23236 5' -67.8 NC_005259.1 + 8820 0.71 0.094961
Target:  5'- gCGCCGGGCCGGugaguugacGCGcUGCGCCGaccaccacagcGUGCc -3'
miRNA:   3'- -GCGGCCCGGCC---------CGUcGCGCGGC-----------CACG- -5'
23236 5' -67.8 NC_005259.1 + 8956 0.71 0.097435
Target:  5'- gCGCCGuGGaCGGGCAcCGUGCCGGgacGUa -3'
miRNA:   3'- -GCGGC-CCgGCCCGUcGCGCGGCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 53665 0.71 0.097435
Target:  5'- gGCCGaGGCCccacgcGGGCAuCGCGauGGUGCg -3'
miRNA:   3'- gCGGC-CCGG------CCCGUcGCGCggCCACG- -5'
23236 5' -67.8 NC_005259.1 + 17764 0.73 0.071404
Target:  5'- cCGCCGcGcGCCGGGCcgAGCGCaCCGagcGUGCg -3'
miRNA:   3'- -GCGGC-C-CGGCCCG--UCGCGcGGC---CACG- -5'
23236 5' -67.8 NC_005259.1 + 43783 0.74 0.066717
Target:  5'- uCGCCGGGCauGaGCAGCGCgggcaccgaguccuuGCCGG-GCg -3'
miRNA:   3'- -GCGGCCCGgcC-CGUCGCG---------------CGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 58569 0.74 0.059453
Target:  5'- gGuuGGGCCGGaucGCGGCGCggcuGCCGG-GCc -3'
miRNA:   3'- gCggCCCGGCC---CGUCGCG----CGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 50652 0.8 0.020543
Target:  5'- cCGCCcucgGGGCCauaGGGCaccAGCGCGUCGGUGCc -3'
miRNA:   3'- -GCGG----CCCGG---CCCG---UCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 68699 0.78 0.027569
Target:  5'- -aUCGaGG-CGGGCAGCGCGUCGGUGCc -3'
miRNA:   3'- gcGGC-CCgGCCCGUCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 60531 0.77 0.033136
Target:  5'- gGCCGGGCCGGgacGCAGCcgcucgucggcauGC-CCGGUGCc -3'
miRNA:   3'- gCGGCCCGGCC---CGUCG-------------CGcGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 63659 0.77 0.037948
Target:  5'- gGCCGGGacgccggacaccUCGGGCaccGGCGCGCCGGggaucUGCg -3'
miRNA:   3'- gCGGCCC------------GGCCCG---UCGCGCGGCC-----ACG- -5'
23236 5' -67.8 NC_005259.1 + 6447 0.76 0.041091
Target:  5'- cCGUCGcGCUGaucGGCAGCGuCGCCGGUGCc -3'
miRNA:   3'- -GCGGCcCGGC---CCGUCGC-GCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 44155 0.75 0.050771
Target:  5'- aCGUgcGGUCGaGCAGCGCGCCGGUGUc -3'
miRNA:   3'- -GCGgcCCGGCcCGUCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 25928 0.75 0.052127
Target:  5'- cCGCCGGuCCGGuG-AGCGCacGCCGGUGCc -3'
miRNA:   3'- -GCGGCCcGGCC-CgUCGCG--CGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 60266 0.74 0.057912
Target:  5'- gGCUGGccaccagcgcuGCCGGGCGGCcaucguCGUCGGUGCg -3'
miRNA:   3'- gCGGCC-----------CGGCCCGUCGc-----GCGGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.