miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 2146 0.67 0.206204
Target:  5'- cCGCaCGGuGCUGGccaGCGGCGUcgagccGCCGGUuGCc -3'
miRNA:   3'- -GCG-GCC-CGGCC---CGUCGCG------CGGCCA-CG- -5'
23236 5' -67.8 NC_005259.1 + 4616 0.66 0.237882
Target:  5'- uGUCGGGCC-GGUGGCGCGaguuCUGGauagUGCc -3'
miRNA:   3'- gCGGCCCGGcCCGUCGCGC----GGCC----ACG- -5'
23236 5' -67.8 NC_005259.1 + 5069 0.73 0.075223
Target:  5'- uCG-UGGGCCGGGUcGaCGgGCCGGUGUc -3'
miRNA:   3'- -GCgGCCCGGCCCGuC-GCgCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 6447 0.76 0.041091
Target:  5'- cCGUCGcGCUGaucGGCAGCGuCGCCGGUGCc -3'
miRNA:   3'- -GCGGCcCGGC---CCGUCGC-GCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 7208 0.69 0.157174
Target:  5'- -aCCGGGCugcgguggaucugCGugaugaacgacGGCAGcCGCGCCGGUGUc -3'
miRNA:   3'- gcGGCCCG-------------GC-----------CCGUC-GCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 8759 0.69 0.149918
Target:  5'- gGUCGaGGCCcuuGGcCAGCGCGgCGGUGa -3'
miRNA:   3'- gCGGC-CCGGc--CC-GUCGCGCgGCCACg -5'
23236 5' -67.8 NC_005259.1 + 8820 0.71 0.094961
Target:  5'- gCGCCGGGCCGGugaguugacGCGcUGCGCCGaccaccacagcGUGCc -3'
miRNA:   3'- -GCGGCCCGGCC---------CGUcGCGCGGC-----------CACG- -5'
23236 5' -67.8 NC_005259.1 + 8956 0.71 0.097435
Target:  5'- gCGCCGuGGaCGGGCAcCGUGCCGGgacGUa -3'
miRNA:   3'- -GCGGC-CCgGCCCGUcGCGCGGCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 9127 0.69 0.146222
Target:  5'- gCGCCccGGuaCGGGCAGcCGUGCUcGUGCc -3'
miRNA:   3'- -GCGG--CCcgGCCCGUC-GCGCGGcCACG- -5'
23236 5' -67.8 NC_005259.1 + 9598 0.67 0.201293
Target:  5'- gGUCuGGCCGuagagcaccguGGCAucgaacacCGCGCCGGUGCc -3'
miRNA:   3'- gCGGcCCGGC-----------CCGUc-------GCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 11012 0.66 0.226893
Target:  5'- gCGCCGGacgcGCCGaGGCAGgaguuCGCCGG-GUg -3'
miRNA:   3'- -GCGGCC----CGGC-CCGUCgc---GCGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 11226 0.66 0.221561
Target:  5'- aCGCCgcaguccucGGGCuCGGGCAucGCGCGCaccacguGG-GCu -3'
miRNA:   3'- -GCGG---------CCCG-GCCCGU--CGCGCGg------CCaCG- -5'
23236 5' -67.8 NC_005259.1 + 11439 0.7 0.113606
Target:  5'- uGCuUGGGCCGcucGCuGC-CGCCGGUGCc -3'
miRNA:   3'- gCG-GCCCGGCc--CGuCGcGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 13431 0.73 0.075223
Target:  5'- cCGCCgGGGCCGcgcuaGGCGugaccgucggcGCgGCGCUGGUGCu -3'
miRNA:   3'- -GCGG-CCCGGC-----CCGU-----------CG-CGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 14754 0.67 0.196009
Target:  5'- gGCCGGGCCGGugauccuGCAcaaCGCGCCGu--- -3'
miRNA:   3'- gCGGCCCGGCC-------CGUc--GCGCGGCcacg -5'
23236 5' -67.8 NC_005259.1 + 17764 0.73 0.071404
Target:  5'- cCGCCGcGcGCCGGGCcgAGCGCaCCGagcGUGCg -3'
miRNA:   3'- -GCGGC-C-CGGCCCG--UCGCGcGGC---CACG- -5'
23236 5' -67.8 NC_005259.1 + 18852 0.68 0.178242
Target:  5'- uCGCCGGuGCCGuGCAacgguuGCGCGCgUGGgagGCc -3'
miRNA:   3'- -GCGGCC-CGGCcCGU------CGCGCG-GCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 20773 0.66 0.249313
Target:  5'- cCGCCca-CCGGGUGGCGCGUCGacaGCa -3'
miRNA:   3'- -GCGGcccGGCCCGUCGCGCGGCca-CG- -5'
23236 5' -67.8 NC_005259.1 + 21229 0.67 0.201293
Target:  5'- aGCCGaguacGCCucGGCAGCGCGCgGGUu- -3'
miRNA:   3'- gCGGCc----CGGc-CCGUCGCGCGgCCAcg -5'
23236 5' -67.8 NC_005259.1 + 23296 0.68 0.182656
Target:  5'- gGuuGGGUauCGGGgucCGGCGCGgUCGGUGUc -3'
miRNA:   3'- gCggCCCG--GCCC---GUCGCGC-GGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.