miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 68796 0.7 0.128964
Target:  5'- aCGCCGGGgCGGuGuCGGUGC-CCGGUa- -3'
miRNA:   3'- -GCGGCCCgGCC-C-GUCGCGcGGCCAcg -5'
23236 5' -67.8 NC_005259.1 + 68699 0.78 0.027569
Target:  5'- -aUCGaGG-CGGGCAGCGCGUCGGUGCc -3'
miRNA:   3'- gcGGC-CCgGCCCGUCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 67413 0.69 0.149918
Target:  5'- gGCCgacaccaucggGGuGCCGGGCucacgcuugAGCGCGUCGGggaUGCc -3'
miRNA:   3'- gCGG-----------CC-CGGCCCG---------UCGCGCGGCC---ACG- -5'
23236 5' -67.8 NC_005259.1 + 67255 0.67 0.187167
Target:  5'- aGCgGGGCCucGGGCAGCcGUGUCGcGUc- -3'
miRNA:   3'- gCGgCCCGG--CCCGUCG-CGCGGC-CAcg -5'
23236 5' -67.8 NC_005259.1 + 66905 0.67 0.206204
Target:  5'- aCGgCGGuagauCC-GGCAGCGCGC-GGUGCu -3'
miRNA:   3'- -GCgGCCc----GGcCCGUCGCGCGgCCACG- -5'
23236 5' -67.8 NC_005259.1 + 63713 0.68 0.161519
Target:  5'- aGCgGGGaUCGGGgccuGCGCaGCCGGUaGCg -3'
miRNA:   3'- gCGgCCC-GGCCCgu--CGCG-CGGCCA-CG- -5'
23236 5' -67.8 NC_005259.1 + 63659 0.77 0.037948
Target:  5'- gGCCGGGacgccggacaccUCGGGCaccGGCGCGCCGGggaucUGCg -3'
miRNA:   3'- gCGGCCC------------GGCCCG---UCGCGCGGCC-----ACG- -5'
23236 5' -67.8 NC_005259.1 + 61913 0.7 0.122603
Target:  5'- uCGCCGGucGUCGucGGCAGCucggucucucGCGCgGGUGCc -3'
miRNA:   3'- -GCGGCC--CGGC--CCGUCG----------CGCGgCCACG- -5'
23236 5' -67.8 NC_005259.1 + 61068 0.66 0.249313
Target:  5'- uGCCGGGCaucGGCauaGGCGuCGUCGGccucggGCu -3'
miRNA:   3'- gCGGCCCGgc-CCG---UCGC-GCGGCCa-----CG- -5'
23236 5' -67.8 NC_005259.1 + 60531 0.77 0.033136
Target:  5'- gGCCGGGCCGGgacGCAGCcgcucgucggcauGC-CCGGUGCc -3'
miRNA:   3'- gCGGCCCGGCC---CGUCG-------------CGcGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 60266 0.74 0.057912
Target:  5'- gGCUGGccaccagcgcuGCCGGGCGGCcaucguCGUCGGUGCg -3'
miRNA:   3'- gCGGCC-----------CGGCCCGUCGc-----GCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 60223 0.68 0.182656
Target:  5'- uCGUCGGcGCUGagcucgcuGGCAcgcuuGCGUGCgGGUGCa -3'
miRNA:   3'- -GCGGCC-CGGC--------CCGU-----CGCGCGgCCACG- -5'
23236 5' -67.8 NC_005259.1 + 59137 0.67 0.211218
Target:  5'- gCGUCGaGCUcGGCAGCgGUGCCGGggaGCu -3'
miRNA:   3'- -GCGGCcCGGcCCGUCG-CGCGGCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 58962 0.7 0.125746
Target:  5'- gGCCagcaGGUCGGGCAGCuCGUCGGcgacgGCg -3'
miRNA:   3'- gCGGc---CCGGCCCGUCGcGCGGCCa----CG- -5'
23236 5' -67.8 NC_005259.1 + 58569 0.74 0.059453
Target:  5'- gGuuGGGCCGGaucGCGGCGCggcuGCCGG-GCc -3'
miRNA:   3'- gCggCCCGGCC---CGUCGCG----CGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 56027 0.69 0.139079
Target:  5'- uCGCCGGGCgggacuuccuCGGGCGGC-UGCgGGUa- -3'
miRNA:   3'- -GCGGCCCG----------GCCCGUCGcGCGgCCAcg -5'
23236 5' -67.8 NC_005259.1 + 54500 0.66 0.237882
Target:  5'- uCGgCGGGCauGGCGGCGaUGUgGGgugGCg -3'
miRNA:   3'- -GCgGCCCGgcCCGUCGC-GCGgCCa--CG- -5'
23236 5' -67.8 NC_005259.1 + 53665 0.71 0.097435
Target:  5'- gGCCGaGGCCccacgcGGGCAuCGCGauGGUGCg -3'
miRNA:   3'- gCGGC-CCGG------CCCGUcGCGCggCCACG- -5'
23236 5' -67.8 NC_005259.1 + 53525 0.69 0.146222
Target:  5'- gGCCaGcGGCaCGGGCucGGUGC-CCGGUGUc -3'
miRNA:   3'- gCGG-C-CCG-GCCCG--UCGCGcGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 52249 0.66 0.234539
Target:  5'- cCGCCcggccccucucagggGGGCCGGGCAGacaG-GaCCGGcccgaUGCg -3'
miRNA:   3'- -GCGG---------------CCCGGCCCGUCg--CgC-GGCC-----ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.