miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23236 5' -67.8 NC_005259.1 + 51674 0.73 0.076805
Target:  5'- gCGUCGGGCaCGGGC-GCGCGauggucucauaGGUGCc -3'
miRNA:   3'- -GCGGCCCG-GCCCGuCGCGCgg---------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 51538 0.7 0.127668
Target:  5'- uGCacgGGGCCGGGCaagugcacgacguuGGgGCcaacgauccggcaGCCGGUGCc -3'
miRNA:   3'- gCGg--CCCGGCCCG--------------UCgCG-------------CGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 50652 0.8 0.020543
Target:  5'- cCGCCcucgGGGCCauaGGGCaccAGCGCGUCGGUGCc -3'
miRNA:   3'- -GCGG----CCCGG---CCCG---UCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 50413 0.72 0.084326
Target:  5'- gCGCCGGuGCCuugaccggcucGGGCAGCGgugcgggcucgggguCGCCGGUcucGCu -3'
miRNA:   3'- -GCGGCC-CGG-----------CCCGUCGC---------------GCGGCCA---CG- -5'
23236 5' -67.8 NC_005259.1 + 47967 0.69 0.138036
Target:  5'- cCGCCGcGccgcccgcgaauauGCCGGGCAGCGCaagaCCGGcuUGUg -3'
miRNA:   3'- -GCGGC-C--------------CGGCCCGUCGCGc---GGCC--ACG- -5'
23236 5' -67.8 NC_005259.1 + 45627 1.09 0.000103
Target:  5'- cCGCCGGGCCGGGCAGCGCGCCGGUGCc -3'
miRNA:   3'- -GCGGCCCGGCCCGUCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 45534 0.67 0.216337
Target:  5'- cCGCCGuGGCugcgagCGGGUuGCuCGCCGG-GCc -3'
miRNA:   3'- -GCGGC-CCG------GCCCGuCGcGCGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 45491 0.68 0.173922
Target:  5'- cCGCUGGuggccuuggucGCUGuGGCcacCGCGCCGGUGUu -3'
miRNA:   3'- -GCGGCC-----------CGGC-CCGuc-GCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 45305 0.66 0.255197
Target:  5'- gCGCCGGugacGCCGaGGCcGC-CGCCGaacUGCg -3'
miRNA:   3'- -GCGGCC----CGGC-CCGuCGcGCGGCc--ACG- -5'
23236 5' -67.8 NC_005259.1 + 44551 0.7 0.113606
Target:  5'- uGCCGagaccGGCa-GGCAGCGCGCCGaccgGCa -3'
miRNA:   3'- gCGGC-----CCGgcCCGUCGCGCGGCca--CG- -5'
23236 5' -67.8 NC_005259.1 + 44472 0.66 0.232333
Target:  5'- cCGCCGcccuGGCCGGGCcaguuGGUGaCGUagaccggGGUGCc -3'
miRNA:   3'- -GCGGC----CCGGCCCG-----UCGC-GCGg------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 44155 0.75 0.050771
Target:  5'- aCGUgcGGUCGaGCAGCGCGCCGGUGUc -3'
miRNA:   3'- -GCGgcCCGGCcCGUCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 43783 0.74 0.066717
Target:  5'- uCGCCGGGCauGaGCAGCGCgggcaccgaguccuuGCCGG-GCg -3'
miRNA:   3'- -GCGGCCCGgcC-CGUCGCG---------------CGGCCaCG- -5'
23236 5' -67.8 NC_005259.1 + 41570 0.66 0.249313
Target:  5'- cCGCCGGaaguauCCGuugagcgugagcGGUcGCGCGUCGGUGUu -3'
miRNA:   3'- -GCGGCCc-----GGC------------CCGuCGCGCGGCCACG- -5'
23236 5' -67.8 NC_005259.1 + 41385 0.66 0.232333
Target:  5'- aGCUuGGCCGGuacccauGGCGCGCCgcucggGGUGCc -3'
miRNA:   3'- gCGGcCCGGCCcg-----UCGCGCGG------CCACG- -5'
23236 5' -67.8 NC_005259.1 + 37224 0.68 0.182656
Target:  5'- cCGCCGGGgCGcuGGCc-CGUGCCGGauugGCu -3'
miRNA:   3'- -GCGGCCCgGC--CCGucGCGCGGCCa---CG- -5'
23236 5' -67.8 NC_005259.1 + 34449 0.69 0.135629
Target:  5'- uGCCGa-CCGGGCAGCGUGUCGcUGa -3'
miRNA:   3'- gCGGCccGGCCCGUCGCGCGGCcACg -5'
23236 5' -67.8 NC_005259.1 + 34176 0.66 0.237322
Target:  5'- uGCCGGaacacaCCGGGCAGUG-GCucggcaaCGGUGUu -3'
miRNA:   3'- gCGGCCc-----GGCCCGUCGCgCG-------GCCACG- -5'
23236 5' -67.8 NC_005259.1 + 30802 0.71 0.097435
Target:  5'- cCGCCGGaacaccugaGUCGGGUaguccGGCGCGCCGaGgucgGCa -3'
miRNA:   3'- -GCGGCC---------CGGCCCG-----UCGCGCGGC-Ca---CG- -5'
23236 5' -67.8 NC_005259.1 + 29088 0.67 0.196484
Target:  5'- uGCCaaGGCCGGGUGGUGaGCUGaUGCg -3'
miRNA:   3'- gCGGc-CCGGCCCGUCGCgCGGCcACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.