miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23237 5' -56.7 NC_005259.1 + 59112 0.66 0.749603
Target:  5'- gUCAGcaCGCgCGG-CAUCGagcaGAGCGUCg -3'
miRNA:   3'- -AGUCcaGCG-GCCaGUAGCg---CUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 58908 0.73 0.354136
Target:  5'- cUCGGGcUCGUCGGcggucuugUCGUCgGCGGGCGCg -3'
miRNA:   3'- -AGUCC-AGCGGCC--------AGUAG-CGCUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 41529 0.73 0.354136
Target:  5'- aCGGGgaaaagcucgUCGUCGcaGUCGUCGCGAGCGUUa -3'
miRNA:   3'- aGUCC----------AGCGGC--CAGUAGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 67423 0.72 0.379994
Target:  5'- aUCGGGgUGCCGGgcucacgcuugagcgCGUCGgGGAUGCCc -3'
miRNA:   3'- -AGUCCaGCGGCCa--------------GUAGCgCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 58858 0.72 0.387734
Target:  5'- cUCGGGcUCGCC-GUCGUCGuCGu-CGCCu -3'
miRNA:   3'- -AGUCC-AGCGGcCAGUAGC-GCuuGCGG- -5'
23237 5' -56.7 NC_005259.1 + 36132 0.72 0.396455
Target:  5'- gUUGGGcCGCCGGgcugucCGUCGCcAugGCCa -3'
miRNA:   3'- -AGUCCaGCGGCCa-----GUAGCGcUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 3306 0.71 0.414271
Target:  5'- cUCGGcgagCGCUGcGUCGaCGUGAGCGCCg -3'
miRNA:   3'- -AGUCca--GCGGC-CAGUaGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 57974 0.71 0.420622
Target:  5'- -gAGGUCGCCGGg-AUCGUGAccccggucgagccaGCGaCCa -3'
miRNA:   3'- agUCCAGCGGCCagUAGCGCU--------------UGC-GG- -5'
23237 5' -56.7 NC_005259.1 + 26128 0.71 0.423362
Target:  5'- --cGGUCGCCGGUCcgacgcCGCcGAgGCCg -3'
miRNA:   3'- aguCCAGCGGCCAGua----GCGcUUgCGG- -5'
23237 5' -56.7 NC_005259.1 + 57697 0.73 0.354136
Target:  5'- cCAGGUUGCCGGgcuugccCGacUCGCGggUcuGCCa -3'
miRNA:   3'- aGUCCAGCGGCCa------GU--AGCGCuuG--CGG- -5'
23237 5' -56.7 NC_005259.1 + 28014 0.73 0.338124
Target:  5'- -gGGGUCGCCGGg-GUUGCGcGCGUUg -3'
miRNA:   3'- agUCCAGCGGCCagUAGCGCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 1886 0.73 0.330318
Target:  5'- gCAGGcCGCCGaGaUCG-CGCGAGCuGCCg -3'
miRNA:   3'- aGUCCaGCGGC-C-AGUaGCGCUUG-CGG- -5'
23237 5' -56.7 NC_005259.1 + 61907 0.84 0.070004
Target:  5'- gUUAGGUCGCCGGUCGUCGuCGGcagcucggucucucGCGCg -3'
miRNA:   3'- -AGUCCAGCGGCCAGUAGC-GCU--------------UGCGg -5'
23237 5' -56.7 NC_005259.1 + 7642 0.76 0.212315
Target:  5'- ---cGUCGCCGaguucgaccgccGUCGUCGUGAGCGCCc -3'
miRNA:   3'- agucCAGCGGC------------CAGUAGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 50453 0.76 0.217793
Target:  5'- -gGGGUCGCCGGUC-UCGCuGAucACGUUg -3'
miRNA:   3'- agUCCAGCGGCCAGuAGCG-CU--UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 31877 0.75 0.245788
Target:  5'- gUCGGucgugaccUCGCCGGUCucaaggcccggCGCGAGCGCCu -3'
miRNA:   3'- -AGUCc-------AGCGGCCAGua---------GCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 56547 0.75 0.249491
Target:  5'- cUCGGGcUCGUCGGUCucggguucggugaucGUCGCGGcugcgaugaGCGCCu -3'
miRNA:   3'- -AGUCC-AGCGGCCAG---------------UAGCGCU---------UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 62879 0.74 0.279417
Target:  5'- gUAGGcCGCuCGGUCAUUgaGCG-ACGCCg -3'
miRNA:   3'- aGUCCaGCG-GCCAGUAG--CGCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 9911 0.74 0.286289
Target:  5'- uUCGGcccucgCGCUGGUCAUUGCGGuugaacacguuGCGCCa -3'
miRNA:   3'- -AGUCca----GCGGCCAGUAGCGCU-----------UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 40043 0.74 0.293293
Target:  5'- -gAGGUCGCCGGUgAUCGgGucgguCGCg -3'
miRNA:   3'- agUCCAGCGGCCAgUAGCgCuu---GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.