miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23237 5' -56.7 NC_005259.1 + 1298 0.66 0.739555
Target:  5'- -gAGGUCGagcucuaCGcg-GUCGUGAGCGCCa -3'
miRNA:   3'- agUCCAGCg------GCcagUAGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 1886 0.73 0.330318
Target:  5'- gCAGGcCGCCGaGaUCG-CGCGAGCuGCCg -3'
miRNA:   3'- aGUCCaGCGGC-C-AGUaGCGCUUG-CGG- -5'
23237 5' -56.7 NC_005259.1 + 3306 0.71 0.414271
Target:  5'- cUCGGcgagCGCUGcGUCGaCGUGAGCGCCg -3'
miRNA:   3'- -AGUCca--GCGGC-CAGUaGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 4334 0.66 0.719169
Target:  5'- -----gUGCCGGaccUCGUCGCGGugaugaGCGCCg -3'
miRNA:   3'- aguccaGCGGCC---AGUAGCGCU------UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 6373 0.69 0.540695
Target:  5'- ---uGUCGCCGGg---CGCGAugGUCa -3'
miRNA:   3'- agucCAGCGGCCaguaGCGCUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 7642 0.76 0.212315
Target:  5'- ---cGUCGCCGaguucgaccgccGUCGUCGUGAGCGCCc -3'
miRNA:   3'- agucCAGCGGC------------CAGUAGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 9911 0.74 0.286289
Target:  5'- uUCGGcccucgCGCUGGUCAUUGCGGuugaacacguuGCGCCa -3'
miRNA:   3'- -AGUCca----GCGGCCAGUAGCGCU-----------UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 10063 0.68 0.635223
Target:  5'- -----aCGCCGGUUugcccUCGCaGGACGCCg -3'
miRNA:   3'- aguccaGCGGCCAGu----AGCG-CUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 10765 0.67 0.698463
Target:  5'- aUCAuGUCggGCgGGUCAUCgaggugggccGCGAGCGCa -3'
miRNA:   3'- -AGUcCAG--CGgCCAGUAG----------CGCUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 12790 0.66 0.739555
Target:  5'- aCGGGUguucaGCCGGUacgcuGUCGCGcgcACGCg -3'
miRNA:   3'- aGUCCAg----CGGCCAg----UAGCGCu--UGCGg -5'
23237 5' -56.7 NC_005259.1 + 15271 0.68 0.603441
Target:  5'- aUCAGGUCGCCGacgagCAa-GCGAucuacacCGCCg -3'
miRNA:   3'- -AGUCCAGCGGCca---GUagCGCUu------GCGG- -5'
23237 5' -56.7 NC_005259.1 + 15697 0.66 0.719169
Target:  5'- cUCAGaUCgaGCCGGUCA---CGAugGCCa -3'
miRNA:   3'- -AGUCcAG--CGGCCAGUagcGCUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 17332 0.67 0.698463
Target:  5'- -aGGGUgUGCCGGUCAaCGU---CGCCg -3'
miRNA:   3'- agUCCA-GCGGCCAGUaGCGcuuGCGG- -5'
23237 5' -56.7 NC_005259.1 + 19855 0.67 0.66698
Target:  5'- cUCGGuGUggcgcucgcgccCGCCGGg-AUCGCcGACGCCg -3'
miRNA:   3'- -AGUC-CA------------GCGGCCagUAGCGcUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 21054 0.71 0.441895
Target:  5'- -aAGGUCGCCGc-CAUCGUguGGACGCg -3'
miRNA:   3'- agUCCAGCGGCcaGUAGCG--CUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 22137 0.69 0.571863
Target:  5'- gCAGccaCGUCGG-CAUCGUGcGCGCCg -3'
miRNA:   3'- aGUCca-GCGGCCaGUAGCGCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 26128 0.71 0.423362
Target:  5'- --cGGUCGCCGGUCcgacgcCGCcGAgGCCg -3'
miRNA:   3'- aguCCAGCGGCCAGua----GCGcUUgCGG- -5'
23237 5' -56.7 NC_005259.1 + 27904 0.67 0.698463
Target:  5'- -gGGGUCGCCGaGaCcgCGCGggUGgUa -3'
miRNA:   3'- agUCCAGCGGC-CaGuaGCGCuuGCgG- -5'
23237 5' -56.7 NC_005259.1 + 28014 0.73 0.338124
Target:  5'- -gGGGUCGCCGGg-GUUGCGcGCGUUg -3'
miRNA:   3'- agUCCAGCGGCCagUAGCGCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 28969 0.68 0.635223
Target:  5'- -gAGGUCgguGCCGaGgc--CGCGAGCGCCc -3'
miRNA:   3'- agUCCAG---CGGC-CaguaGCGCUUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.