miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23237 5' -56.7 NC_005259.1 + 29580 0.68 0.603441
Target:  5'- gCAGGUCGauaaGGUCAUUGCcGAgGCa -3'
miRNA:   3'- aGUCCAGCgg--CCAGUAGCGcUUgCGg -5'
23237 5' -56.7 NC_005259.1 + 30905 0.69 0.571863
Target:  5'- -gAGGUgUGCCGGUUgagCGUGAGCagGCCa -3'
miRNA:   3'- agUCCA-GCGGCCAGua-GCGCUUG--CGG- -5'
23237 5' -56.7 NC_005259.1 + 31877 0.75 0.245788
Target:  5'- gUCGGucgugaccUCGCCGGUCucaaggcccggCGCGAGCGCCu -3'
miRNA:   3'- -AGUCc-------AGCGGCCAGua---------GCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 32045 0.66 0.729407
Target:  5'- aUCGGGUUGCUGaGgaacgCGUCGaacGAUGCCu -3'
miRNA:   3'- -AGUCCAGCGGC-Ca----GUAGCgc-UUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 33210 0.66 0.723275
Target:  5'- aUCAGcacguucuuguugccGcCGCCGGUCAcCGCGuacgUGCCa -3'
miRNA:   3'- -AGUC---------------CaGCGGCCAGUaGCGCuu--GCGG- -5'
23237 5' -56.7 NC_005259.1 + 33552 0.67 0.698463
Target:  5'- ---cGUCGCCGGUCAggaaGAAcCGCCc -3'
miRNA:   3'- agucCAGCGGCCAGUagcgCUU-GCGG- -5'
23237 5' -56.7 NC_005259.1 + 34114 0.67 0.698463
Target:  5'- aCGuGUCGCCGGg---CGCGAgcACGUCc -3'
miRNA:   3'- aGUcCAGCGGCCaguaGCGCU--UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 34732 0.68 0.592882
Target:  5'- gUCGGGgaaacCGuuGGUgAUCGU--GCGCCa -3'
miRNA:   3'- -AGUCCa----GCggCCAgUAGCGcuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 34904 0.69 0.541725
Target:  5'- aCGGGcCGCuCGGgcaUCAcacugcugccucgggCGCGAACGCCu -3'
miRNA:   3'- aGUCCaGCG-GCC---AGUa--------------GCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 36132 0.72 0.396455
Target:  5'- gUUGGGcCGCCGGgcugucCGUCGCcAugGCCa -3'
miRNA:   3'- -AGUCCaGCGGCCa-----GUAGCGcUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 40043 0.74 0.293293
Target:  5'- -gAGGUCGCCGGUgAUCGgGucgguCGCg -3'
miRNA:   3'- agUCCAGCGGCCAgUAGCgCuu---GCGg -5'
23237 5' -56.7 NC_005259.1 + 40657 0.7 0.490139
Target:  5'- gUCAuGcUCGCCGaG-CAgCGCGAGCGCCu -3'
miRNA:   3'- -AGUcC-AGCGGC-CaGUaGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 41529 0.73 0.354136
Target:  5'- aCGGGgaaaagcucgUCGUCGcaGUCGUCGCGAGCGUUa -3'
miRNA:   3'- aGUCC----------AGCGGC--CAGUAGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 41641 0.69 0.571863
Target:  5'- --cGGU-GCCGGUC--UGCGGGCGCUc -3'
miRNA:   3'- aguCCAgCGGCCAGuaGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 42971 0.67 0.698463
Target:  5'- aCGGGaUGCCGGggaUCAUCGUugcCGCCc -3'
miRNA:   3'- aGUCCaGCGGCC---AGUAGCGcuuGCGG- -5'
23237 5' -56.7 NC_005259.1 + 44936 0.71 0.44849
Target:  5'- aUCGGGUCcaugGCaccagcgggcagugCGGUCAUCG-GGAUGCCg -3'
miRNA:   3'- -AGUCCAG----CG--------------GCCAGUAGCgCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 45245 1.13 0.000648
Target:  5'- cUCAGGUCGCCGGUCAUCGCGAACGCCg -3'
miRNA:   3'- -AGUCCAGCGGCCAGUAGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 45397 0.69 0.551027
Target:  5'- -gGGGUCGCCGccgagCG-CGCuGAugGCCg -3'
miRNA:   3'- agUCCAGCGGCca---GUaGCG-CUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 45635 0.66 0.719169
Target:  5'- cCGGGcagcgCGCCGGUgcCGcCGUGAAcacCGCCg -3'
miRNA:   3'- aGUCCa----GCGGCCA--GUaGCGCUU---GCGG- -5'
23237 5' -56.7 NC_005259.1 + 46549 0.69 0.530429
Target:  5'- aUCuGGUCGCCgaccgcgccuauGGUCGcggCGuCGAccGCGCCg -3'
miRNA:   3'- -AGuCCAGCGG------------CCAGUa--GC-GCU--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.