miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23237 5' -56.7 NC_005259.1 + 67423 0.72 0.379994
Target:  5'- aUCGGGgUGCCGGgcucacgcuugagcgCGUCGgGGAUGCCc -3'
miRNA:   3'- -AGUCCaGCGGCCa--------------GUAGCgCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 66205 0.69 0.571863
Target:  5'- aCGGGUCagGCgCGGUCG-CGCcGACGCa -3'
miRNA:   3'- aGUCCAG--CG-GCCAGUaGCGcUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 63236 0.71 0.441895
Target:  5'- -gGGGUCGCUGGUCAgaccCGAcGCGUCg -3'
miRNA:   3'- agUCCAGCGGCCAGUagc-GCU-UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 62879 0.74 0.279417
Target:  5'- gUAGGcCGCuCGGUCAUUgaGCG-ACGCCg -3'
miRNA:   3'- aGUCCaGCG-GCCAGUAG--CGCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 61907 0.84 0.070004
Target:  5'- gUUAGGUCGCCGGUCGUCGuCGGcagcucggucucucGCGCg -3'
miRNA:   3'- -AGUCCAGCGGCCAGUAGC-GCU--------------UGCGg -5'
23237 5' -56.7 NC_005259.1 + 61436 0.68 0.582353
Target:  5'- gCGGGcgCGCCGGUCgAUCucauccugcuGCGAuccuUGCCg -3'
miRNA:   3'- aGUCCa-GCGGCCAG-UAG----------CGCUu---GCGG- -5'
23237 5' -56.7 NC_005259.1 + 59112 0.66 0.749603
Target:  5'- gUCAGcaCGCgCGG-CAUCGagcaGAGCGUCg -3'
miRNA:   3'- -AGUCcaGCG-GCCaGUAGCg---CUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 58908 0.73 0.354136
Target:  5'- cUCGGGcUCGUCGGcggucuugUCGUCgGCGGGCGCg -3'
miRNA:   3'- -AGUCC-AGCGGCC--------AGUAG-CGCUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 58858 0.72 0.387734
Target:  5'- cUCGGGcUCGCC-GUCGUCGuCGu-CGCCu -3'
miRNA:   3'- -AGUCC-AGCGGcCAGUAGC-GCuuGCGG- -5'
23237 5' -56.7 NC_005259.1 + 58776 0.71 0.46088
Target:  5'- gCGGGcgcugugCGCCGGUCGagGCGGugauUGCCu -3'
miRNA:   3'- aGUCCa------GCGGCCAGUagCGCUu---GCGG- -5'
23237 5' -56.7 NC_005259.1 + 58343 0.66 0.729407
Target:  5'- aUCAGGUCGgUGGcC-UCGgGcACGUCg -3'
miRNA:   3'- -AGUCCAGCgGCCaGuAGCgCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 57974 0.71 0.420622
Target:  5'- -gAGGUCGCCGGg-AUCGUGAccccggucgagccaGCGaCCa -3'
miRNA:   3'- agUCCAGCGGCCagUAGCGCU--------------UGC-GG- -5'
23237 5' -56.7 NC_005259.1 + 57697 0.73 0.354136
Target:  5'- cCAGGUUGCCGGgcuugccCGacUCGCGggUcuGCCa -3'
miRNA:   3'- aGUCCAGCGGCCa------GU--AGCGCuuG--CGG- -5'
23237 5' -56.7 NC_005259.1 + 57069 0.68 0.635223
Target:  5'- aUCGGGUCGaaCGcGUCgaggauGUCGgguCGAGCGCCa -3'
miRNA:   3'- -AGUCCAGCg-GC-CAG------UAGC---GCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 56547 0.75 0.249491
Target:  5'- cUCGGGcUCGUCGGUCucggguucggugaucGUCGCGGcugcgaugaGCGCCu -3'
miRNA:   3'- -AGUCC-AGCGGCCAG---------------UAGCGCU---------UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 55660 0.68 0.592882
Target:  5'- cUCAGGUCauuGCCGGUCAUU----ACGCa -3'
miRNA:   3'- -AGUCCAG---CGGCCAGUAGcgcuUGCGg -5'
23237 5' -56.7 NC_005259.1 + 53692 0.7 0.520234
Target:  5'- --uGGUgCGaCCGGUCAaCGUGAACGUg -3'
miRNA:   3'- aguCCA-GC-GGCCAGUaGCGCUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 52024 0.71 0.46088
Target:  5'- gUCAGGcCGCCGcacugcgcgcuGUCGccgucgaggaUCGCG-ACGCCg -3'
miRNA:   3'- -AGUCCaGCGGC-----------CAGU----------AGCGCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 51656 0.68 0.582353
Target:  5'- aCGGGUUGCCGcgcgggcgcGUCGggcacgggcgCGCGAugGUCu -3'
miRNA:   3'- aGUCCAGCGGC---------CAGUa---------GCGCUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 50615 0.66 0.717111
Target:  5'- gUAGGUCGaauacagcacagCGGUCcaUGCGAuuACGCCg -3'
miRNA:   3'- aGUCCAGCg-----------GCCAGuaGCGCU--UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.