miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23237 5' -56.7 NC_005259.1 + 10063 0.68 0.635223
Target:  5'- -----aCGCCGGUUugcccUCGCaGGACGCCg -3'
miRNA:   3'- aguccaGCGGCCAGu----AGCG-CUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 48538 0.68 0.603441
Target:  5'- cUCGGcgcuGUCGCCGGUCuuguuguacgCGCGcuGCGUCu -3'
miRNA:   3'- -AGUC----CAGCGGCCAGua--------GCGCu-UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 29580 0.68 0.603441
Target:  5'- gCAGGUCGauaaGGUCAUUGCcGAgGCa -3'
miRNA:   3'- aGUCCAGCgg--CCAGUAGCGcUUgCGg -5'
23237 5' -56.7 NC_005259.1 + 15271 0.68 0.603441
Target:  5'- aUCAGGUCGCCGacgagCAa-GCGAucuacacCGCCg -3'
miRNA:   3'- -AGUCCAGCGGCca---GUagCGCUu------GCGG- -5'
23237 5' -56.7 NC_005259.1 + 47183 0.68 0.603441
Target:  5'- -aAGGUCGgCGGUgcCGUCGgCGAAgaacuUGCCg -3'
miRNA:   3'- agUCCAGCgGCCA--GUAGC-GCUU-----GCGG- -5'
23237 5' -56.7 NC_005259.1 + 55660 0.68 0.592882
Target:  5'- cUCAGGUCauuGCCGGUCAUU----ACGCa -3'
miRNA:   3'- -AGUCCAG---CGGCCAGUAGcgcuUGCGg -5'
23237 5' -56.7 NC_005259.1 + 34732 0.68 0.592882
Target:  5'- gUCGGGgaaacCGuuGGUgAUCGU--GCGCCa -3'
miRNA:   3'- -AGUCCa----GCggCCAgUAGCGcuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 51656 0.68 0.582353
Target:  5'- aCGGGUUGCCGcgcgggcgcGUCGggcacgggcgCGCGAugGUCu -3'
miRNA:   3'- aGUCCAGCGGC---------CAGUa---------GCGCUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 61436 0.68 0.582353
Target:  5'- gCGGGcgCGCCGGUCgAUCucauccugcuGCGAuccuUGCCg -3'
miRNA:   3'- aGUCCa-GCGGCCAG-UAG----------CGCUu---GCGG- -5'
23237 5' -56.7 NC_005259.1 + 22137 0.69 0.571863
Target:  5'- gCAGccaCGUCGG-CAUCGUGcGCGCCg -3'
miRNA:   3'- aGUCca-GCGGCCaGUAGCGCuUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 30905 0.69 0.571863
Target:  5'- -gAGGUgUGCCGGUUgagCGUGAGCagGCCa -3'
miRNA:   3'- agUCCA-GCGGCCAGua-GCGCUUG--CGG- -5'
23237 5' -56.7 NC_005259.1 + 66205 0.69 0.571863
Target:  5'- aCGGGUCagGCgCGGUCG-CGCcGACGCa -3'
miRNA:   3'- aGUCCAG--CG-GCCAGUaGCGcUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 41641 0.69 0.571863
Target:  5'- --cGGU-GCCGGUC--UGCGGGCGCUc -3'
miRNA:   3'- aguCCAgCGGCCAGuaGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 45397 0.69 0.551027
Target:  5'- -gGGGUCGCCGccgagCG-CGCuGAugGCCg -3'
miRNA:   3'- agUCCAGCGGCca---GUaGCG-CUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 34904 0.69 0.541725
Target:  5'- aCGGGcCGCuCGGgcaUCAcacugcugccucgggCGCGAACGCCu -3'
miRNA:   3'- aGUCCaGCG-GCC---AGUa--------------GCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 6373 0.69 0.540695
Target:  5'- ---uGUCGCCGGg---CGCGAugGUCa -3'
miRNA:   3'- agucCAGCGGCCaguaGCGCUugCGG- -5'
23237 5' -56.7 NC_005259.1 + 46549 0.69 0.530429
Target:  5'- aUCuGGUCGCCgaccgcgccuauGGUCGcggCGuCGAccGCGCCg -3'
miRNA:   3'- -AGuCCAGCGG------------CCAGUa--GC-GCU--UGCGG- -5'
23237 5' -56.7 NC_005259.1 + 53692 0.7 0.520234
Target:  5'- --uGGUgCGaCCGGUCAaCGUGAACGUg -3'
miRNA:   3'- aguCCA-GC-GGCCAGUaGCGCUUGCGg -5'
23237 5' -56.7 NC_005259.1 + 40657 0.7 0.490139
Target:  5'- gUCAuGcUCGCCGaG-CAgCGCGAGCGCCu -3'
miRNA:   3'- -AGUcC-AGCGGC-CaGUaGCGCUUGCGG- -5'
23237 5' -56.7 NC_005259.1 + 52024 0.71 0.46088
Target:  5'- gUCAGGcCGCCGcacugcgcgcuGUCGccgucgaggaUCGCG-ACGCCg -3'
miRNA:   3'- -AGUCCaGCGGC-----------CAGU----------AGCGCuUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.