miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23238 3' -64.2 NC_005259.1 + 44736 1.1 0.000179
Target:  5'- aGCGCGCCCUCGACCGCGCCGAGGCUCu -3'
miRNA:   3'- -CGCGCGGGAGCUGGCGCGGCUCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 46562 0.77 0.060103
Target:  5'- cCGCGCCUauggucgcggcgUCGACCGCGCCgcccGAGGCg- -3'
miRNA:   3'- cGCGCGGG------------AGCUGGCGCGG----CUCCGag -5'
23238 3' -64.2 NC_005259.1 + 36662 0.77 0.061738
Target:  5'- cGC-CGCCCUCGccGCCGcCGCCGGGGuCUUg -3'
miRNA:   3'- -CGcGCGGGAGC--UGGC-GCGGCUCC-GAG- -5'
23238 3' -64.2 NC_005259.1 + 766 0.76 0.074447
Target:  5'- cCGCGUCC---ACCGCGCCGAGGCg- -3'
miRNA:   3'- cGCGCGGGagcUGGCGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 36439 0.75 0.082801
Target:  5'- aGCGuCGCCgaggUCGACCGCGUCGAGGgUg -3'
miRNA:   3'- -CGC-GCGGg---AGCUGGCGCGGCUCCgAg -5'
23238 3' -64.2 NC_005259.1 + 45162 0.75 0.0848
Target:  5'- gGC-CGCCCUUGGCCuuguugcGCGCCGAGGUc- -3'
miRNA:   3'- -CGcGCGGGAGCUGG-------CGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 35266 0.75 0.085025
Target:  5'- uCGCGCCC---GCCGCGCCGGGGUc- -3'
miRNA:   3'- cGCGCGGGagcUGGCGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 9554 0.73 0.110614
Target:  5'- uGCcCGgCCUCGACCGCGUCGgcgaGGuGCUCg -3'
miRNA:   3'- -CGcGCgGGAGCUGGCGCGGC----UC-CGAG- -5'
23238 3' -64.2 NC_005259.1 + 1687 0.72 0.12927
Target:  5'- uGCGCGCCCgcaagCGcgaacucaagcGCCGCcucGCCGAGGUg- -3'
miRNA:   3'- -CGCGCGGGa----GC-----------UGGCG---CGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 37198 0.72 0.13611
Target:  5'- uGCG-GCCCUUGccgccaccgccGCCGcCGCCGGGGCg- -3'
miRNA:   3'- -CGCgCGGGAGC-----------UGGC-GCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 40348 0.71 0.150412
Target:  5'- uCGCG-CCUCGAugaugaaCCGCGCCGAGgGCa- -3'
miRNA:   3'- cGCGCgGGAGCU-------GGCGCGGCUC-CGag -5'
23238 3' -64.2 NC_005259.1 + 52164 0.71 0.154686
Target:  5'- aGCGCcgagGCgCUCaugcagcagGACCGCGCCGAcaacgcacGGCUCa -3'
miRNA:   3'- -CGCG----CGgGAG---------CUGGCGCGGCU--------CCGAG- -5'
23238 3' -64.2 NC_005259.1 + 35868 0.71 0.154686
Target:  5'- cCGCGUCCacCGcaGCCGcCGCCGAGGCa- -3'
miRNA:   3'- cGCGCGGGa-GC--UGGC-GCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 31783 0.71 0.158667
Target:  5'- uGUGCuGCgCCUUGACCGCGUCGucaucGaGCUCg -3'
miRNA:   3'- -CGCG-CG-GGAGCUGGCGCGGCu----C-CGAG- -5'
23238 3' -64.2 NC_005259.1 + 55878 0.71 0.162741
Target:  5'- aGCGCcucGCCC-CGACCucgggggucGCGCCGGGGUc- -3'
miRNA:   3'- -CGCG---CGGGaGCUGG---------CGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 29685 0.71 0.162741
Target:  5'- aCGCGCCgcaaUCGAgaCCGaUGCCGAGGCa- -3'
miRNA:   3'- cGCGCGGg---AGCU--GGC-GCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 40560 0.71 0.162741
Target:  5'- cGCGCGCCCgcgCGGugUUGCuGUCGGcGGCUCg -3'
miRNA:   3'- -CGCGCGGGa--GCU--GGCG-CGGCU-CCGAG- -5'
23238 3' -64.2 NC_005259.1 + 60142 0.71 0.166908
Target:  5'- uGCGCGgCCUUGGCCGCcGCCucagcGGcCUCa -3'
miRNA:   3'- -CGCGCgGGAGCUGGCG-CGGcu---CC-GAG- -5'
23238 3' -64.2 NC_005259.1 + 46945 0.71 0.166908
Target:  5'- cCGCGCCgC-CGACCGCGuuGAG-CUUg -3'
miRNA:   3'- cGCGCGG-GaGCUGGCGCggCUCcGAG- -5'
23238 3' -64.2 NC_005259.1 + 60521 0.71 0.17553
Target:  5'- aGUGCGCCa-UGGCCGgGCCGGGacgcagccGCUCg -3'
miRNA:   3'- -CGCGCGGgaGCUGGCgCGGCUC--------CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.