miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23238 3' -64.2 NC_005259.1 + 766 0.76 0.074447
Target:  5'- cCGCGUCC---ACCGCGCCGAGGCg- -3'
miRNA:   3'- cGCGCGGGagcUGGCGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 1376 0.67 0.285315
Target:  5'- cGCGcCGCCCgCGAggcCCGCGCaUGAGcCUCu -3'
miRNA:   3'- -CGC-GCGGGaGCU---GGCGCG-GCUCcGAG- -5'
23238 3' -64.2 NC_005259.1 + 1578 0.67 0.30582
Target:  5'- aGCGCGCCCcacACCGagGUCGAGGUc- -3'
miRNA:   3'- -CGCGCGGGagcUGGCg-CGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 1687 0.72 0.12927
Target:  5'- uGCGCGCCCgcaagCGcgaacucaagcGCCGCcucGCCGAGGUg- -3'
miRNA:   3'- -CGCGCGGGa----GC-----------UGGCG---CGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 4427 0.69 0.241135
Target:  5'- cGCGCGCCCgaggUCGAgCCGC-CCGugcgaguGGGCa- -3'
miRNA:   3'- -CGCGCGGG----AGCU-GGCGcGGC-------UCCGag -5'
23238 3' -64.2 NC_005259.1 + 4644 0.69 0.230321
Target:  5'- -aGUGCCCgCGcACCGCGCCuacGGGCa- -3'
miRNA:   3'- cgCGCGGGaGC-UGGCGCGGc--UCCGag -5'
23238 3' -64.2 NC_005259.1 + 5515 0.68 0.259683
Target:  5'- cGCGCGCCg-CGcCCGCaaGCUGuGGCUg -3'
miRNA:   3'- -CGCGCGGgaGCuGGCG--CGGCuCCGAg -5'
23238 3' -64.2 NC_005259.1 + 6088 0.68 0.278724
Target:  5'- -gGaCGCCCUCaacGCCGagauCGCCGAGGC-Cg -3'
miRNA:   3'- cgC-GCGGGAGc--UGGC----GCGGCUCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 7438 0.67 0.292027
Target:  5'- cCGCGCCgCaUGGCaGCGCCGAggauGGCUUg -3'
miRNA:   3'- cGCGCGG-GaGCUGgCGCGGCU----CCGAG- -5'
23238 3' -64.2 NC_005259.1 + 7948 0.66 0.373991
Target:  5'- uGCGCGCCCaCGGCUGCuUgGuGGCcCa -3'
miRNA:   3'- -CGCGCGGGaGCUGGCGcGgCuCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 8146 0.69 0.224796
Target:  5'- cCGCGCCCUCG-UUGCucuggccaugGCCuGAGGCUa -3'
miRNA:   3'- cGCGCGGGAGCuGGCG----------CGG-CUCCGAg -5'
23238 3' -64.2 NC_005259.1 + 9151 0.69 0.241715
Target:  5'- uCGUGCCCgUCGACgGCauGCCGGuGGCa- -3'
miRNA:   3'- cGCGCGGG-AGCUGgCG--CGGCU-CCGag -5'
23238 3' -64.2 NC_005259.1 + 9518 0.69 0.230321
Target:  5'- uCGCGCgCgUCGACCGcCGCCG-GGUc- -3'
miRNA:   3'- cGCGCG-GgAGCUGGC-GCGGCuCCGag -5'
23238 3' -64.2 NC_005259.1 + 9554 0.73 0.110614
Target:  5'- uGCcCGgCCUCGACCGCGUCGgcgaGGuGCUCg -3'
miRNA:   3'- -CGcGCgGGAGCUGGCGCGGC----UC-CGAG- -5'
23238 3' -64.2 NC_005259.1 + 11010 0.69 0.230321
Target:  5'- cCGCGCCg--GA-CGCGCCGAGGCa- -3'
miRNA:   3'- cGCGCGGgagCUgGCGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 11710 0.67 0.292027
Target:  5'- -aGCauuCCCUgGGCCaCGgCGAGGCUCa -3'
miRNA:   3'- cgCGc--GGGAgCUGGcGCgGCUCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 12951 0.66 0.371559
Target:  5'- uGCGCGaCCCcgcaUCGAccCCGCGUCGgaagcgcccaccguGGuGCUCg -3'
miRNA:   3'- -CGCGC-GGG----AGCU--GGCGCGGC--------------UC-CGAG- -5'
23238 3' -64.2 NC_005259.1 + 13448 0.67 0.312902
Target:  5'- gGCGUGaCCgUCGGCgCgGCGCUGGuGCUCa -3'
miRNA:   3'- -CGCGC-GGgAGCUG-G-CGCGGCUcCGAG- -5'
23238 3' -64.2 NC_005259.1 + 14317 0.66 0.365927
Target:  5'- gGC-CGCCCUCGACgC-CGCCGcccgcgugcGGGC-Cg -3'
miRNA:   3'- -CGcGCGGGAGCUG-GcGCGGC---------UCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 15728 0.66 0.349388
Target:  5'- gGCGCGCgacaucgauuuCCUCG-CCGCcuacgagGCCGGGGaggaUCu -3'
miRNA:   3'- -CGCGCG-----------GGAGCuGGCG-------CGGCUCCg---AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.