miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23238 3' -64.2 NC_005259.1 + 16371 0.66 0.357985
Target:  5'- uGCGUGCC----GCUGCGCCGAcGaGCUCc -3'
miRNA:   3'- -CGCGCGGgagcUGGCGCGGCU-C-CGAG- -5'
23238 3' -64.2 NC_005259.1 + 16543 0.67 0.283325
Target:  5'- gGUGCGCCCgagCGAccagagaucCCGCccaccgggcagaucGCCGAGGacaUCg -3'
miRNA:   3'- -CGCGCGGGa--GCU---------GGCG--------------CGGCUCCg--AG- -5'
23238 3' -64.2 NC_005259.1 + 19427 0.69 0.224796
Target:  5'- uCGUGCUcgCUCGACCuCGCCccGAGGCUg -3'
miRNA:   3'- cGCGCGG--GAGCUGGcGCGG--CUCCGAg -5'
23238 3' -64.2 NC_005259.1 + 20610 0.68 0.259683
Target:  5'- uGCgGCGCaCCgCGACCGUGUCGAuGcGUUCg -3'
miRNA:   3'- -CG-CGCG-GGaGCUGGCGCGGCU-C-CGAG- -5'
23238 3' -64.2 NC_005259.1 + 22178 0.67 0.300936
Target:  5'- aGCGCGCCCaucgugguugcgaccUUGcagacguuggccACCGCGCaccgccgCGAGGCUg -3'
miRNA:   3'- -CGCGCGGG---------------AGC------------UGGCGCG-------GCUCCGAg -5'
23238 3' -64.2 NC_005259.1 + 22982 0.68 0.272256
Target:  5'- uCGUGCCCggugUCGACgC-CGCCGAGGUc- -3'
miRNA:   3'- cGCGCGGG----AGCUG-GcGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 23705 0.69 0.230321
Target:  5'- cCGCGUCg-UGAUCGCGCCGGacGGUUCg -3'
miRNA:   3'- cGCGCGGgaGCUGGCGCGGCU--CCGAG- -5'
23238 3' -64.2 NC_005259.1 + 24828 0.66 0.355626
Target:  5'- cCGUGCCCgcacCGACCaaGCaguccgugcgcuacGCCGAGGCcCg -3'
miRNA:   3'- cGCGCGGGa---GCUGG--CG--------------CGGCUCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 26799 0.66 0.326698
Target:  5'- aGCGCcgccGCCCggUUGGCCgguaccggcggugGUGCCGGGGCg- -3'
miRNA:   3'- -CGCG----CGGG--AGCUGG-------------CGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 27858 0.66 0.357985
Target:  5'- cGCGCGCCgUaCGACCGC-CCucuuGGGUg- -3'
miRNA:   3'- -CGCGCGGgA-GCUGGCGcGGc---UCCGag -5'
23238 3' -64.2 NC_005259.1 + 28329 0.66 0.350164
Target:  5'- uGUGcCGUCCUUGGCgGCGaaauCGAGGC-Ca -3'
miRNA:   3'- -CGC-GCGGGAGCUGgCGCg---GCUCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 28715 0.68 0.265909
Target:  5'- aGCGCGaacaUCGACCGUcucaagGCCGAGGgUUa -3'
miRNA:   3'- -CGCGCggg-AGCUGGCG------CGGCUCCgAG- -5'
23238 3' -64.2 NC_005259.1 + 29685 0.71 0.162741
Target:  5'- aCGCGCCgcaaUCGAgaCCGaUGCCGAGGCa- -3'
miRNA:   3'- cGCGCGGg---AGCU--GGC-GCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 31783 0.71 0.158667
Target:  5'- uGUGCuGCgCCUUGACCGCGUCGucaucGaGCUCg -3'
miRNA:   3'- -CGCG-CG-GGAGCUGGCGCGGCu----C-CGAG- -5'
23238 3' -64.2 NC_005259.1 + 33139 0.66 0.326698
Target:  5'- cGCGCGUgaucuugCCguaGACCGC-CUGAGGCa- -3'
miRNA:   3'- -CGCGCG-------GGag-CUGGCGcGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 33571 0.66 0.373991
Target:  5'- --cCGCCCgaacUUGACCGCGUCGcGGGC-Ca -3'
miRNA:   3'- cgcGCGGG----AGCUGGCGCGGC-UCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 34554 0.66 0.357985
Target:  5'- aGCuuGCCgUCGggGCCGaCGgCGAGGUUCu -3'
miRNA:   3'- -CGcgCGGgAGC--UGGC-GCgGCUCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 34862 0.69 0.239977
Target:  5'- gGCGUGUCCUCGuCgGUGCCGgaccggggugccucGGGCa- -3'
miRNA:   3'- -CGCGCGGGAGCuGgCGCGGC--------------UCCGag -5'
23238 3' -64.2 NC_005259.1 + 35266 0.75 0.085025
Target:  5'- uCGCGCCC---GCCGCGCCGGGGUc- -3'
miRNA:   3'- cGCGCGGGagcUGGCGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 35604 0.67 0.285315
Target:  5'- gGUGCGUCCUgGccacGCUGCGUCGAGuaGUUCg -3'
miRNA:   3'- -CGCGCGGGAgC----UGGCGCGGCUC--CGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.