miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23238 3' -64.2 NC_005259.1 + 66258 0.7 0.203812
Target:  5'- aGCGCgGCCCgCG-CCGgGCgGcGGCUCa -3'
miRNA:   3'- -CGCG-CGGGaGCuGGCgCGgCuCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 64758 0.66 0.350164
Target:  5'- cCGCGCCUcgCGACggUGCGCCucGGCg- -3'
miRNA:   3'- cGCGCGGGa-GCUG--GCGCGGcuCCGag -5'
23238 3' -64.2 NC_005259.1 + 64018 0.66 0.334889
Target:  5'- cCGCGCCCga-GgCGCGgCGAGGC-Cg -3'
miRNA:   3'- cGCGCGGGagcUgGCGCgGCUCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 61133 0.66 0.357985
Target:  5'- gGUGcCGUUCUCGAuCCGUGCCGA--CUCa -3'
miRNA:   3'- -CGC-GCGGGAGCU-GGCGCGGCUccGAG- -5'
23238 3' -64.2 NC_005259.1 + 60521 0.71 0.17553
Target:  5'- aGUGCGCCa-UGGCCGgGCCGGGacgcagccGCUCg -3'
miRNA:   3'- -CGCGCGGgaGCUGGCgCGGCUC--------CGAG- -5'
23238 3' -64.2 NC_005259.1 + 60142 0.71 0.166908
Target:  5'- uGCGCGgCCUUGGCCGCcGCCucagcGGcCUCa -3'
miRNA:   3'- -CGCGCgGGAGCUGGCG-CGGcu---CC-GAG- -5'
23238 3' -64.2 NC_005259.1 + 55878 0.71 0.162741
Target:  5'- aGCGCcucGCCC-CGACCucgggggucGCGCCGGGGUc- -3'
miRNA:   3'- -CGCG---CGGGaGCUGG---------CGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 54674 0.68 0.278724
Target:  5'- uGCGUauGCUCggcgagcgaGACCGUGUCGAGGCg- -3'
miRNA:   3'- -CGCG--CGGGag-------CUGGCGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 52164 0.71 0.154686
Target:  5'- aGCGCcgagGCgCUCaugcagcagGACCGCGCCGAcaacgcacGGCUCa -3'
miRNA:   3'- -CGCG----CGgGAG---------CUGGCGCGGCU--------CCGAG- -5'
23238 3' -64.2 NC_005259.1 + 50518 0.66 0.373991
Target:  5'- uGCGCuGCaCCUCGACgCGCucGCCucGGGCg- -3'
miRNA:   3'- -CGCG-CG-GGAGCUG-GCG--CGGc-UCCGag -5'
23238 3' -64.2 NC_005259.1 + 50410 0.69 0.235961
Target:  5'- aGCGCGCcggugCCUUGACCG-GCuCGggcagcggugcGGGCUCg -3'
miRNA:   3'- -CGCGCG-----GGAGCUGGCgCG-GC-----------UCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 49656 0.67 0.320108
Target:  5'- -gGCGgCCUCGAUaCGCGCCu--GCUCg -3'
miRNA:   3'- cgCGCgGGAGCUG-GCGCGGcucCGAG- -5'
23238 3' -64.2 NC_005259.1 + 48401 0.66 0.328176
Target:  5'- cCGaCGCCCgccgucgagucaccgCGACCGCcaccaCCGAGGCg- -3'
miRNA:   3'- cGC-GCGGGa--------------GCUGGCGc----GGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 46978 0.66 0.365927
Target:  5'- cGC-CGCCgaUGAUCGgGCCGAGGgUg -3'
miRNA:   3'- -CGcGCGGgaGCUGGCgCGGCUCCgAg -5'
23238 3' -64.2 NC_005259.1 + 46945 0.71 0.166908
Target:  5'- cCGCGCCgC-CGACCGCGuuGAG-CUUg -3'
miRNA:   3'- cGCGCGG-GaGCUGGCGCggCUCcGAG- -5'
23238 3' -64.2 NC_005259.1 + 46903 0.66 0.362736
Target:  5'- -aGCGCCCgccgagcaguccgCGugCGcCGCCGAG-CUUg -3'
miRNA:   3'- cgCGCGGGa------------GCugGC-GCGGCUCcGAG- -5'
23238 3' -64.2 NC_005259.1 + 46837 0.67 0.320108
Target:  5'- -aGCGCCCcggCGAgcugcccgaguCCGCugucgGUCGAGGCUUg -3'
miRNA:   3'- cgCGCGGGa--GCU-----------GGCG-----CGGCUCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 46562 0.77 0.060103
Target:  5'- cCGCGCCUauggucgcggcgUCGACCGCGCCgcccGAGGCg- -3'
miRNA:   3'- cGCGCGGG------------AGCUGGCGCGG----CUCCGag -5'
23238 3' -64.2 NC_005259.1 + 45767 0.67 0.320108
Target:  5'- aGCaCGCCCUCGccgggugccagcACCGCGuuGAcGGUg- -3'
miRNA:   3'- -CGcGCGGGAGC------------UGGCGCggCU-CCGag -5'
23238 3' -64.2 NC_005259.1 + 45410 0.69 0.235961
Target:  5'- aGCGCGCUgaUGGCCGcCGCCGcuGcCUCg -3'
miRNA:   3'- -CGCGCGGgaGCUGGC-GCGGCucC-GAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.