miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23238 3' -64.2 NC_005259.1 + 28715 0.68 0.265909
Target:  5'- aGCGCGaacaUCGACCGUcucaagGCCGAGGgUUa -3'
miRNA:   3'- -CGCGCggg-AGCUGGCG------CGGCUCCgAG- -5'
23238 3' -64.2 NC_005259.1 + 40625 0.68 0.265909
Target:  5'- uCGCGCacgaaCUCGauGCCGuCGCCGAGaaagucauGCUCg -3'
miRNA:   3'- cGCGCGg----GAGC--UGGC-GCGGCUC--------CGAG- -5'
23238 3' -64.2 NC_005259.1 + 54674 0.68 0.278724
Target:  5'- uGCGUauGCUCggcgagcgaGACCGUGUCGAGGCg- -3'
miRNA:   3'- -CGCG--CGGGag-------CUGGCGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 36613 0.68 0.278724
Target:  5'- aCGCGaCCCUUGccgcCCGCGCCGcccgcaAGGCcCg -3'
miRNA:   3'- cGCGC-GGGAGCu---GGCGCGGC------UCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 6088 0.68 0.278724
Target:  5'- -gGaCGCCCUCaacGCCGagauCGCCGAGGC-Cg -3'
miRNA:   3'- cgC-GCGGGAGc--UGGC----GCGGCUCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 20610 0.68 0.259683
Target:  5'- uGCgGCGCaCCgCGACCGUGUCGAuGcGUUCg -3'
miRNA:   3'- -CG-CGCG-GGaGCUGGCGCGGCU-C-CGAG- -5'
23238 3' -64.2 NC_005259.1 + 34862 0.69 0.239977
Target:  5'- gGCGUGUCCUCGuCgGUGCCGgaccggggugccucGGGCa- -3'
miRNA:   3'- -CGCGCGGGAGCuGgCGCGGC--------------UCCGag -5'
23238 3' -64.2 NC_005259.1 + 4644 0.69 0.230321
Target:  5'- -aGUGCCCgCGcACCGCGCCuacGGGCa- -3'
miRNA:   3'- cgCGCGGGaGC-UGGCGCGGc--UCCGag -5'
23238 3' -64.2 NC_005259.1 + 19427 0.69 0.224796
Target:  5'- uCGUGCUcgCUCGACCuCGCCccGAGGCUg -3'
miRNA:   3'- cGCGCGG--GAGCUGGcGCGG--CUCCGAg -5'
23238 3' -64.2 NC_005259.1 + 8146 0.69 0.224796
Target:  5'- cCGCGCCCUCG-UUGCucuggccaugGCCuGAGGCUa -3'
miRNA:   3'- cGCGCGGGAGCuGGCG----------CGG-CUCCGAg -5'
23238 3' -64.2 NC_005259.1 + 9518 0.69 0.230321
Target:  5'- uCGCGCgCgUCGACCGcCGCCG-GGUc- -3'
miRNA:   3'- cGCGCG-GgAGCUGGC-GCGGCuCCGag -5'
23238 3' -64.2 NC_005259.1 + 11010 0.69 0.230321
Target:  5'- cCGCGCCg--GA-CGCGCCGAGGCa- -3'
miRNA:   3'- cGCGCGGgagCUgGCGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 23705 0.69 0.230321
Target:  5'- cCGCGUCg-UGAUCGCGCCGGacGGUUCg -3'
miRNA:   3'- cGCGCGGgaGCUGGCGCGGCU--CCGAG- -5'
23238 3' -64.2 NC_005259.1 + 45410 0.69 0.235961
Target:  5'- aGCGCGCUgaUGGCCGcCGCCGcuGcCUCg -3'
miRNA:   3'- -CGCGCGGgaGCUGGC-GCGGCucC-GAG- -5'
23238 3' -64.2 NC_005259.1 + 50410 0.69 0.235961
Target:  5'- aGCGCGCcggugCCUUGACCG-GCuCGggcagcggugcGGGCUCg -3'
miRNA:   3'- -CGCGCG-----GGAGCUGGCgCG-GC-----------UCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 4427 0.69 0.241135
Target:  5'- cGCGCGCCCgaggUCGAgCCGC-CCGugcgaguGGGCa- -3'
miRNA:   3'- -CGCGCGGG----AGCU-GGCGcGGC-------UCCGag -5'
23238 3' -64.2 NC_005259.1 + 9151 0.69 0.241715
Target:  5'- uCGUGCCCgUCGACgGCauGCCGGuGGCa- -3'
miRNA:   3'- cGCGCGGG-AGCUGgCG--CGGCU-CCGag -5'
23238 3' -64.2 NC_005259.1 + 66258 0.7 0.203812
Target:  5'- aGCGCgGCCCgCG-CCGgGCgGcGGCUCa -3'
miRNA:   3'- -CGCG-CGGGaGCuGGCgCGgCuCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 42197 0.7 0.179988
Target:  5'- uGCGCGCCgUCGcgauggaugcccGCCGCGCCGccguccccGGC-Ca -3'
miRNA:   3'- -CGCGCGGgAGC------------UGGCGCGGCu-------CCGaG- -5'
23238 3' -64.2 NC_005259.1 + 40560 0.71 0.162741
Target:  5'- cGCGCGCCCgcgCGGugUUGCuGUCGGcGGCUCg -3'
miRNA:   3'- -CGCGCGGGa--GCU--GGCG-CGGCU-CCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.