miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23238 5' -56 NC_005259.1 + 44770 1.09 0.001304
Target:  5'- cCGAUCCCGCAUCGGCGGUCGAGAACAg -3'
miRNA:   3'- -GCUAGGGCGUAGCCGCCAGCUCUUGU- -5'
23238 5' -56 NC_005259.1 + 49714 0.79 0.153603
Target:  5'- aGAUCCgGCAgauauUCGGCGGgcggCGAGAGCu -3'
miRNA:   3'- gCUAGGgCGU-----AGCCGCCa---GCUCUUGu -5'
23238 5' -56 NC_005259.1 + 33312 0.79 0.153603
Target:  5'- uCGAUCCCGcCGUCGGCGGUCacgcGGAAg- -3'
miRNA:   3'- -GCUAGGGC-GUAGCCGCCAGc---UCUUgu -5'
23238 5' -56 NC_005259.1 + 46517 0.72 0.422275
Target:  5'- aCGAUCCCGCga-GcCGGUCGGGGAUc -3'
miRNA:   3'- -GCUAGGGCGuagCcGCCAGCUCUUGu -5'
23238 5' -56 NC_005259.1 + 58921 0.7 0.509621
Target:  5'- gCGGUCuuGuCGUCGGCGGgcgCGGuGGCAg -3'
miRNA:   3'- -GCUAGggC-GUAGCCGCCa--GCUcUUGU- -5'
23238 5' -56 NC_005259.1 + 42147 0.7 0.550836
Target:  5'- uCGcgCCCGCGUUGGUGcacgCGAcGAGCAg -3'
miRNA:   3'- -GCuaGGGCGUAGCCGCca--GCU-CUUGU- -5'
23238 5' -56 NC_005259.1 + 28219 0.69 0.582402
Target:  5'- aCGGUCgugCCGCcaccGUCGGCGG-CGGGGugGu -3'
miRNA:   3'- -GCUAG---GGCG----UAGCCGCCaGCUCUugU- -5'
23238 5' -56 NC_005259.1 + 38871 0.67 0.678298
Target:  5'- aCGcgCCCGCAaUGGCGGUguUGAcGACGc -3'
miRNA:   3'- -GCuaGGGCGUaGCCGCCA--GCUcUUGU- -5'
23238 5' -56 NC_005259.1 + 50262 0.67 0.709858
Target:  5'- aCGGgcuaCUCGCugucGUCGGUGG-CGGGAACGu -3'
miRNA:   3'- -GCUa---GGGCG----UAGCCGCCaGCUCUUGU- -5'
23238 5' -56 NC_005259.1 + 1290 0.66 0.750883
Target:  5'- aCGAcCCCGagGUCGagcucuacGCGGUCGuGAGCGc -3'
miRNA:   3'- -GCUaGGGCg-UAGC--------CGCCAGCuCUUGU- -5'
23238 5' -56 NC_005259.1 + 56927 0.66 0.770755
Target:  5'- ---gCCCGCGUCGGUgagcaugcGGUUGGcGAACu -3'
miRNA:   3'- gcuaGGGCGUAGCCG--------CCAGCU-CUUGu -5'
23238 5' -56 NC_005259.1 + 61197 0.66 0.779526
Target:  5'- cCGGUCUgcuugcaccacauCGCAggaagCGGCGGUgugcgcacCGAGAACu -3'
miRNA:   3'- -GCUAGG-------------GCGUa----GCCGCCA--------GCUCUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.