miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23239 5' -52.8 NC_005259.1 + 3122 0.68 0.809043
Target:  5'- cGCGgcaccgUGGGCaGCGGACg--GCACCg -3'
miRNA:   3'- uCGCaaa---GCUCG-CGCCUGacuUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 4348 0.68 0.81837
Target:  5'- cGCGgugaUGAGCGcCGGACgGcACGCCc -3'
miRNA:   3'- uCGCaaa-GCUCGC-GCCUGaCuUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 7872 0.66 0.892523
Target:  5'- cGGUGgccCGAGUGCuuGGACUcGGGCAgCCg -3'
miRNA:   3'- -UCGCaaaGCUCGCG--CCUGA-CUUGU-GG- -5'
23239 5' -52.8 NC_005259.1 + 10655 0.66 0.877718
Target:  5'- cGCGg-UCGAGCGCcuugaGGAUggucuGCGCCg -3'
miRNA:   3'- uCGCaaAGCUCGCG-----CCUGacu--UGUGG- -5'
23239 5' -52.8 NC_005259.1 + 13447 0.76 0.368547
Target:  5'- aGGCGUgaccgUCG-GCGCGGcGCUGGugcuCACCg -3'
miRNA:   3'- -UCGCAa----AGCuCGCGCC-UGACUu---GUGG- -5'
23239 5' -52.8 NC_005259.1 + 14557 0.72 0.576649
Target:  5'- cGGCaggcCGAGCGgGGACcggcGAACACCa -3'
miRNA:   3'- -UCGcaaaGCUCGCgCCUGa---CUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 14644 0.66 0.885249
Target:  5'- uGCGUgaCGAugGCGUGGGCUcAGC-CCg -3'
miRNA:   3'- uCGCAaaGCU--CGCGCCUGAcUUGuGG- -5'
23239 5' -52.8 NC_005259.1 + 17200 0.67 0.86191
Target:  5'- cGCGUgaggCGGGUaGacgGGACUGGGCGCg -3'
miRNA:   3'- uCGCAaa--GCUCG-Cg--CCUGACUUGUGg -5'
23239 5' -52.8 NC_005259.1 + 19200 0.73 0.544358
Target:  5'- cAGCGagcUCGuGGUGCGGGCggcgacgugGGACACCg -3'
miRNA:   3'- -UCGCaa-AGC-UCGCGCCUGa--------CUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 26516 0.67 0.86191
Target:  5'- cGGCGagaaGAGCGCGG--UGAGCAgCu -3'
miRNA:   3'- -UCGCaaagCUCGCGCCugACUUGUgG- -5'
23239 5' -52.8 NC_005259.1 + 27001 0.67 0.84515
Target:  5'- cGaCGUUUCGGucuugaacgccGCGCcguaGCUGAACACCu -3'
miRNA:   3'- uC-GCAAAGCU-----------CGCGcc--UGACUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 32579 0.67 0.869936
Target:  5'- uAGCGUUgggcagCGGuuuacGCGCGuGCaGGACGCCg -3'
miRNA:   3'- -UCGCAAa-----GCU-----CGCGCcUGaCUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 34861 0.66 0.90628
Target:  5'- aGGCGUguccUCGucGGUGcCGGACcgGggUGCCu -3'
miRNA:   3'- -UCGCAa---AGC--UCGC-GCCUGa-CuuGUGG- -5'
23239 5' -52.8 NC_005259.1 + 36121 0.67 0.86191
Target:  5'- gAGCGUaagcagUUGGGcCGcCGGGCUGuccguCGCCa -3'
miRNA:   3'- -UCGCAa-----AGCUC-GC-GCCUGACuu---GUGG- -5'
23239 5' -52.8 NC_005259.1 + 36381 0.67 0.869936
Target:  5'- aAGCGg--CGAgguuggccaGCGCGagcGACuUGAGCGCCu -3'
miRNA:   3'- -UCGCaaaGCU---------CGCGC---CUG-ACUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 36438 0.68 0.809043
Target:  5'- cAGCGUcgccgaggUCGAccGCGuCGaGGgUGAGCACCg -3'
miRNA:   3'- -UCGCAa-------AGCU--CGC-GC-CUgACUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 36511 0.68 0.817446
Target:  5'- uGGCGUguccUUGAaccacccGCGCGGugUGAcACGCg -3'
miRNA:   3'- -UCGCAa---AGCU-------CGCGCCugACU-UGUGg -5'
23239 5' -52.8 NC_005259.1 + 39825 0.67 0.827504
Target:  5'- cAGCGcaUUGAGCGCGuuggucggcGACaGGAUGCCg -3'
miRNA:   3'- -UCGCaaAGCUCGCGC---------CUGaCUUGUGG- -5'
23239 5' -52.8 NC_005259.1 + 40087 0.66 0.892523
Target:  5'- cGCGcacCGAGCGCGGAUUcucgagucggcGAAUGCg -3'
miRNA:   3'- uCGCaaaGCUCGCGCCUGA-----------CUUGUGg -5'
23239 5' -52.8 NC_005259.1 + 41608 0.66 0.892523
Target:  5'- cGGUGUUUCGGauCGCGaGGCUGAcCAUg -3'
miRNA:   3'- -UCGCAAAGCUc-GCGC-CUGACUuGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.